Variant report

Variant	rs7784480
Chromosome Location	chr7:150118618-150118619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150053210..150054184-chr7:150117715..150118824,10	K562	blood:
2	chr7:150116757..150119299-chr7:150121619..150123870,2	K562	blood:
3	chr7:150087043..150088957-chr7:150117870..150119700,2	K562	blood:
4	chr7:150101999..150102606-chr7:150118129..150118641,2	MCF-7	breast:
5	chr7:150059620..150061191-chr7:150117387..150118935,2	K562	blood:
6	chr7:150028052..150030548-chr7:150116213..150119618,3	K562	blood:
7	chr7:150018194..150021946-chr7:150117540..150120663,4	K562	blood:
8	chr7:150053181..150054101-chr7:150117910..150119216,10	MCF-7	breast:
9	chr7:150102560..150103239-chr7:150117868..150118779,2	K562	blood:
10	chr7:149982871..149983953-chr7:150117906..150118807,5	K562	blood:
11	chr7:149982878..149983831-chr7:150117963..150118748,4	MCF-7	breast:
12	chr7:150018490..150020350-chr7:150118148..150119765,2	K562	blood:
13	chr7:150064502..150066580-chr7:150117463..150119519,2	K562	blood:
14	chr7:150061516..150068785-chr7:150115028..150120426,9	MCF-7	breast:
15	chr7:150016445..150018121-chr7:150116375..150118836,2	K562	blood:
16	chr7:150072869..150076898-chr7:150116534..150121450,5	K562	blood:
17	chr7:150013473..150016267-chr7:150116910..150118946,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000214022	Chromatin interaction
ENSG00000196456	Chromatin interaction
ENSG00000106526	Chromatin interaction
ENSG00000127399	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10266063	1.00[AMR][1000 genomes]
rs10269285	1.00[AMR][1000 genomes]
rs28535865	1.00[AMR][1000 genomes]
rs28556649	1.00[AMR][1000 genomes]
rs28710951	1.00[AMR][1000 genomes]
rs73726104	1.00[AMR][1000 genomes]
rs73728121	1.00[AMR][1000 genomes]
rs940450	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150104400-150131600	Weak transcription	Right Atrium	heart
2	chr7:150108200-150124000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr7:150108400-150125000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:150109200-150124400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:150109800-150124400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:150110200-150142200	Weak transcription	Gastric	stomach
7	chr7:150111200-150124400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:150111200-150124400	Weak transcription	Thymus	Thymus
9	chr7:150112200-150124800	Weak transcription	Spleen	Spleen
10	chr7:150117600-150118800	Enhancers	Dnd41	blood
11	chr7:150117800-150124400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:150118200-150118800	Enhancers	Placenta	Placenta
13	chr7:150118200-150119000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr7:150118400-150118800	Enhancers	Fetal Thymus	thymus
15	chr7:150118400-150124200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:150118600-150119600	Weak transcription	K562	blood
17	chr7:150118600-150119800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:150118600-150121200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:150118600-150124400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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