Variant report

Variant	rs73728121
Chromosome Location	chr7:150074102-150074103
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESRRA	chr7:150072696-150078301	GM12878	blood:	n/a	chr7:150072882-150072895 chr7:150072884-150072894 chr7:150072882-150072894 chr7:150073704-150073717 chr7:150072884-150072894
2	POLR2A	chr7:150073771-150074109	K562	blood:	n/a	n/a
3	POLR2A	chr7:150072905-150074172	HepG2	liver:	n/a	n/a
4	POLR2A	chr7:150074096-150077376	H1-hESC	embryonic stem cell:	n/a	n/a
5	NFIC	chr7:150073963-150074762	GM12878	blood:	n/a	n/a
6	CHD1	chr7:150073739-150074273	GM12878	blood:	n/a	n/a
7	POLR2A	chr7:150072892-150077940	GM12878	blood:	n/a	n/a
8	POLR2A	chr7:150072938-150074123	Hela-S3	cervix:	n/a	n/a
9	MTA3	chr7:150072694-150076289	GM12878	blood:	n/a	n/a
10	POLR2A	chr7:150072822-150081034	GM19099	blood:	n/a	n/a
11	POLR2A	chr7:150072869-150078584	GM12878	blood:	n/a	n/a
12	POLR2A	chr7:150072884-150076643	MCF10A-Er-Src	breast:	n/a	n/a
13	POLR2A	chr7:150072704-150074112	GM12891	blood:	n/a	n/a
14	POLR2A	chr7:150064843-150076606	K562	blood:	n/a	n/a
15	POLR2A	chr7:150071218-150077938	HepG2	liver:	n/a	n/a
16	POLR2A	chr7:150072266-150078511	GM12891	blood:	n/a	n/a
17	POLR2A	chr7:150073312-150074164	HL-60	blood:	n/a	n/a
18	POLR2A	chr7:150072717-150074112	PANC-1	pancreas:	n/a	n/a
19	POLR2A	chr7:150072674-150074190	GM12892	blood:	n/a	n/a
20	POLR2A	chr7:150074101-150074751	SK-N-SH	brain:	n/a	n/a
21	POLR2A	chr7:150072793-150074167	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:150063876..150080670-chr7:150093696..150109118,65	MCF-7	breast:
2	chr7:150026422..150030526-chr7:150071487..150075243,4	K562	blood:
3	chr7:150018539..150023441-chr7:150073756..150077036,7	MCF-7	breast:
4	chr7:150073288..150077950-chr7:150093880..150099928,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240449	TF binding region
ZNF775	TF binding region
ENSG00000127399	Chromatin interaction
ENSG00000196456	Chromatin interaction
ENSG00000106526	Chromatin interaction
ENSG00000188707	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10266063	1.00[AMR][1000 genomes]
rs10269285	1.00[AMR][1000 genomes]
rs28535865	1.00[AMR][1000 genomes]
rs28556649	1.00[AMR][1000 genomes]
rs28710951	1.00[AMR][1000 genomes]
rs73726104	1.00[AMR][1000 genomes]
rs7784480	1.00[AMR][1000 genomes]
rs940450	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv889453	chr7:150009838-150104410	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv889455	chr7:150013393-150104410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv889456	chr7:150013393-150115183	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv889457	chr7:150020295-150104410	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
11	nsv889458	chr7:150020295-150115183	Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv521407	chr7:150020295-150118590	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv465211	chr7:150035526-150104410	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
14	nsv608991	chr7:150035526-150104410	Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv608992	chr7:150045910-150115183	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
16	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
17	nsv889460	chr7:150060163-150079459	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
18	nsv889461	chr7:150060163-150081485	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
19	nsv889462	chr7:150060163-150108536	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150068200-150075400	Weak transcription	HMEC	breast
2	chr7:150068800-150075200	Weak transcription	NH-A	brain
3	chr7:150069000-150075200	Weak transcription	Fetal Brain Male	brain
4	chr7:150070000-150075400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:150070000-150075400	Weak transcription	Aorta	Aorta
6	chr7:150070400-150075200	Weak transcription	Psoas Muscle	Psoas
7	chr7:150070400-150075600	Weak transcription	Ovary	ovary
8	chr7:150070600-150075200	Weak transcription	Small Intestine	intestine
9	chr7:150070600-150075600	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:150070800-150075200	Weak transcription	NHEK	skin
11	chr7:150071000-150074600	Weak transcription	Fetal Lung	lung
12	chr7:150071400-150074800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:150071400-150075200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:150071400-150075400	Weak transcription	Right Ventricle	heart
15	chr7:150071600-150075000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:150071600-150075200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr7:150071600-150075200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:150071600-150075200	Weak transcription	Colon Smooth Muscle	Colon
19	chr7:150071800-150074200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:150071800-150074600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:150071800-150074600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:150071800-150074600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr7:150071800-150074800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:150071800-150075000	Weak transcription	Osteobl	bone
25	chr7:150071800-150075200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr7:150071800-150075200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:150071800-150075200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:150071800-150075200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr7:150071800-150075200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:150071800-150075200	Weak transcription	Right Atrium	heart
31	chr7:150071800-150075200	Weak transcription	NHDF-Ad	bronchial
32	chr7:150071800-150075400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr7:150071800-150075400	Weak transcription	Brain Angular Gyrus	brain
34	chr7:150071800-150075400	Weak transcription	Fetal Brain Female	brain
35	chr7:150071800-150075600	Weak transcription	Esophagus	oesophagus
36	chr7:150071800-150076000	Weak transcription	Gastric	stomach
37	chr7:150072000-150074200	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:150072000-150074200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:150072000-150074600	Weak transcription	Brain Hippocampus Middle	brain
40	chr7:150072000-150074800	Weak transcription	Brain Germinal Matrix	brain
41	chr7:150072000-150074800	Weak transcription	Hela-S3	cervix
42	chr7:150072000-150075000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr7:150072000-150075000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr7:150072000-150075000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr7:150072000-150075200	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr7:150072000-150075200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr7:150072000-150075200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr7:150072000-150075200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr7:150072000-150075200	Weak transcription	Brain Substantia Nigra	brain
50	chr7:150072000-150075400	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links