Variant report

Variant	rs73727666
Chromosome Location	chr6:24458216-24458217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24444100..24446602-chr6:24457686..24459822,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs28564434	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28661697	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28706811	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59942835	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6456613	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938894	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751846	0.83[EUR][1000 genomes]
rs7752186	0.83[EUR][1000 genomes]
rs7752603	0.83[EUR][1000 genomes]
rs7768124	0.83[EUR][1000 genomes]
rs7772115	0.83[EUR][1000 genomes]
rs7772540	0.83[EUR][1000 genomes]
rs9461007	0.83[EUR][1000 genomes]
rs9461008	0.83[EUR][1000 genomes]
rs9461009	0.83[EUR][1000 genomes]
rs9467142	0.83[EUR][1000 genomes]
rs9467144	0.83[EUR][1000 genomes]
rs9467145	0.83[EUR][1000 genomes]
rs9467146	0.83[EUR][1000 genomes]
rs9467147	0.83[EUR][1000 genomes]
rs9467150	0.83[EUR][1000 genomes]
rs9467151	0.83[EUR][1000 genomes]
rs9467152	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9467153	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9467154	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467159	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467163	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv2763542	chr6:24445131-24520637	Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv519552	chr6:24451256-24524704	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv515988	chr6:24454679-24463461	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24421200-24459600	Weak transcription	Spleen	Spleen
2	chr6:24427800-24467000	Weak transcription	Brain Germinal Matrix	brain
3	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:24429400-24483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:24432600-24463800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:24437800-24459600	Weak transcription	Left Ventricle	heart
7	chr6:24438000-24464000	Weak transcription	Pancreas	Pancrea
8	chr6:24438400-24483200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:24438600-24459800	Weak transcription	Fetal Stomach	stomach
10	chr6:24438800-24469200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:24447200-24470200	Weak transcription	Aorta	Aorta
12	chr6:24447400-24490400	Weak transcription	Brain Anterior Caudate	brain
13	chr6:24448200-24466200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:24448800-24488000	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:24450200-24459400	Weak transcription	Esophagus	oesophagus
16	chr6:24452200-24458400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:24452600-24466400	Weak transcription	Dnd41	blood
18	chr6:24452800-24458400	Weak transcription	Hela-S3	cervix
19	chr6:24453200-24471000	Strong transcription	Liver	Liver
20	chr6:24457400-24458800	Strong transcription	Thymus	Thymus
21	chr6:24458000-24458800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr6:24458200-24458600	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr6:24458200-24459400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:24458200-24459600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:24458200-24459600	Enhancers	Adipose Nuclei	Adipose

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