Variant report

Variant	rs9467142
Chromosome Location	chr6:24432445-24432446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:24430844..24432891-chr6:24519902..24523248,3	MCF-7	breast:
2	chr6:24413201..24415525-chr6:24429958..24432815,2	K562	blood:
3	chr6:24431522..24434175-chr6:24447084..24450027,2	MCF-7	breast:
4	chr6:24413201..24415774-chr6:24431315..24432878,2	K562	blood:

Variant related genes	Relation type
ENSG00000112294	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1772256	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28564434	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28661697	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs28706811	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs3181759	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56148439	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59942835	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6456613	0.83[EUR][1000 genomes]
rs6938894	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73727666	0.83[EUR][1000 genomes]
rs7751846	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752186	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752603	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7768124	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7772115	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7772540	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461006	0.93[AFR][1000 genomes]
rs9461007	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461008	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9461009	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467143	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9467144	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467145	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467146	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467147	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467150	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467151	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467152	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467153	0.90[AFR][1000 genomes]
rs9467154	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9467159	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9467163	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9467164	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24404600-24437400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:24417400-24451800	Strong transcription	Liver	Liver
3	chr6:24421200-24448800	Weak transcription	Gastric	stomach
4	chr6:24421200-24459600	Weak transcription	Spleen	Spleen
5	chr6:24421400-24434000	Weak transcription	Fetal Brain Male	brain
6	chr6:24422400-24437400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:24423400-24433600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:24423400-24437200	Weak transcription	Pancreas	Pancrea
9	chr6:24423400-24439400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:24423600-24437200	Weak transcription	Right Ventricle	heart
11	chr6:24424000-24456600	Weak transcription	Ovary	ovary
12	chr6:24424400-24445800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:24425400-24437200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:24425400-24439600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:24426000-24438800	Weak transcription	Brain Substantia Nigra	brain
16	chr6:24426200-24446000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:24426400-24441600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:24426400-24446000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:24426600-24438800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:24427200-24433800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:24427400-24435000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:24427600-24433800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:24427600-24436600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:24427600-24437600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:24427600-24439200	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:24427600-24439400	Weak transcription	Fetal Thymus	thymus
27	chr6:24427600-24440000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:24427600-24440000	Weak transcription	Dnd41	blood
29	chr6:24427600-24441800	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:24427600-24445600	Weak transcription	Fetal Brain Female	brain
31	chr6:24427600-24456800	Weak transcription	Lung	lung
32	chr6:24427800-24435800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:24427800-24467000	Weak transcription	Brain Germinal Matrix	brain
34	chr6:24428200-24432600	Weak transcription	GM12878-XiMat	blood
35	chr6:24428200-24438000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr6:24428200-24449400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr6:24428800-24445000	Weak transcription	Psoas Muscle	Psoas
38	chr6:24429000-24447800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
40	chr6:24429200-24455600	Weak transcription	Brain Angular Gyrus	brain
41	chr6:24429400-24437000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:24429400-24438600	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:24429400-24445000	Weak transcription	Brain Anterior Caudate	brain
44	chr6:24429400-24483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:24429600-24432800	Weak transcription	Adipose Nuclei	Adipose
46	chr6:24429600-24433600	Weak transcription	Duodenum Mucosa	Duodenum
47	chr6:24429600-24436600	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:24429600-24437400	Weak transcription	Aorta	Aorta
49	chr6:24429600-24444800	Weak transcription	HepG2	liver
50	chr6:24429600-24455000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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