Variant report

Variant	rs9467164
Chromosome Location	chr6:24443578-24443579
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24438222..24440221-chr6:24443252..24446225,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs28564434	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28661697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28706811	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59942835	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6456613	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938894	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73727666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751846	0.83[EUR][1000 genomes]
rs7752186	0.83[EUR][1000 genomes]
rs7752603	0.83[EUR][1000 genomes]
rs7768124	0.83[EUR][1000 genomes]
rs7772115	0.83[EUR][1000 genomes]
rs7772540	0.83[EUR][1000 genomes]
rs9461007	0.83[EUR][1000 genomes]
rs9461008	0.83[EUR][1000 genomes]
rs9461009	0.83[EUR][1000 genomes]
rs9467142	0.83[EUR][1000 genomes]
rs9467144	0.83[EUR][1000 genomes]
rs9467145	0.83[EUR][1000 genomes]
rs9467146	0.83[EUR][1000 genomes]
rs9467147	0.83[EUR][1000 genomes]
rs9467150	0.83[EUR][1000 genomes]
rs9467151	0.83[EUR][1000 genomes]
rs9467152	0.83[EUR][1000 genomes]
rs9467153	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9467154	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467159	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9467163	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026638	chr6:24347972-24475300	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24417400-24451800	Strong transcription	Liver	Liver
2	chr6:24421200-24448800	Weak transcription	Gastric	stomach
3	chr6:24421200-24459600	Weak transcription	Spleen	Spleen
4	chr6:24424000-24456600	Weak transcription	Ovary	ovary
5	chr6:24424400-24445800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:24426200-24446000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:24426400-24446000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:24427600-24445600	Weak transcription	Fetal Brain Female	brain
9	chr6:24427600-24456800	Weak transcription	Lung	lung
10	chr6:24427800-24467000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:24428200-24449400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:24428800-24445000	Weak transcription	Psoas Muscle	Psoas
13	chr6:24429000-24447800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:24429000-24494200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:24429200-24455600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:24429400-24445000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:24429400-24483800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:24429600-24444800	Weak transcription	HepG2	liver
19	chr6:24429600-24455000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:24430800-24448400	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:24432600-24463800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:24433600-24451600	Weak transcription	Adipose Nuclei	Adipose
23	chr6:24437600-24455400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:24437800-24450600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:24437800-24459600	Weak transcription	Left Ventricle	heart
26	chr6:24438000-24464000	Weak transcription	Pancreas	Pancrea
27	chr6:24438200-24445400	Weak transcription	Aorta	Aorta
28	chr6:24438200-24447800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:24438200-24455600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:24438400-24445600	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:24438400-24448600	Weak transcription	Right Ventricle	heart
32	chr6:24438400-24483200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:24438600-24459800	Weak transcription	Fetal Stomach	stomach
34	chr6:24438800-24469200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr6:24440400-24452000	Weak transcription	Primary T cells from cord blood	blood
36	chr6:24440600-24445400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:24441400-24452000	Weak transcription	Thymus	Thymus
38	chr6:24442000-24443600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:24442000-24443800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:24442000-24448000	Weak transcription	K562	blood
41	chr6:24442000-24452000	Weak transcription	Fetal Thymus	thymus
42	chr6:24442600-24445000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr6:24443200-24444000	Active TSS	NHDF-Ad	bronchial
44	chr6:24443400-24443800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:24443400-24444000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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