Variant report

Variant	rs73736234
Chromosome Location	chr6:26384060-26384061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26363140..26366680-chr6:26382117..26385194,3	MCF-7	breast:
2	chr6:26197076..26199216-chr6:26383709..26386156,2	K562	blood:
3	chr6:26365252..26366783-chr6:26384022..26386049,2	K562	blood:
4	chr6:26378930..26384775-chr6:26385231..26390850,8	MCF-7	breast:
5	chr6:26382632..26385246-chr6:26444412..26446084,2	K562	blood:
6	chr6:26383587..26385903-chr6:26419597..26421640,2	MCF-7	breast:
7	chr6:26383299..26384986-chr6:26520070..26522600,2	K562	blood:
8	chr6:26365183..26366783-chr6:26383299..26386049,2	K562	blood:
9	chr6:26056232..26057928-chr6:26382432..26384674,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000186470	Chromatin interaction
ENSG00000124549	Chromatin interaction
ENSG00000111801	Chromatin interaction
ENSG00000215979	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000124508	Chromatin interaction
ENSG00000228223	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs36222428	0.83[EUR][1000 genomes]
rs36222431	0.83[EUR][1000 genomes]
rs55807624	0.83[EUR][1000 genomes]
rs57038103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60978077	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61246844	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs61607411	0.83[EUR][1000 genomes]
rs73383168	0.83[EUR][1000 genomes]
rs73383176	0.83[EUR][1000 genomes]
rs73383179	0.83[EUR][1000 genomes]
rs73383193	0.83[EUR][1000 genomes]
rs73736221	1.00[EUR][1000 genomes]
rs73736235	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73736237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73736249	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73740106	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
4	nsv482729	chr6:26291011-26470898	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv482836	chr6:26352883-26520964	Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv883491	chr6:26367689-26410800	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv883492	chr6:26367689-26436592	Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv883493	chr6:26367689-26442786	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv883494	chr6:26367833-26442786	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv883495	chr6:26367833-26443853	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv3334611	chr6:26367893-26443308	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv482407	chr6:26369320-26550148	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
13	nsv883496	chr6:26369549-26413088	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv883497	chr6:26369549-26442786	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv883498	chr6:26369549-26443853	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv1030863	chr6:26371006-26405990	Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
17	nsv883499	chr6:26377591-26454454	Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
18	esv3427999	chr6:26378373-26453532	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
19	esv1807546	chr6:26378681-26387546	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
20	nsv462664	chr6:26379537-26451553	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
21	nsv601184	chr6:26379537-26451553	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26383000-26384400	Active TSS	Stomach Smooth Muscle	stomach
2	chr6:26383000-26384600	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr6:26383200-26384200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr6:26383200-26384200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:26383200-26384200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:26383200-26384200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:26383200-26384200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:26383200-26384200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:26383200-26384200	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr6:26383200-26384200	Active TSS	Thymus	Thymus
11	chr6:26383200-26384400	Active TSS	H1 Cell Line	embryonic stem cell
12	chr6:26383200-26384400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr6:26383200-26384400	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:26383200-26384400	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:26383200-26384400	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr6:26383200-26384400	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:26383200-26384400	Active TSS	A549	lung
18	chr6:26383200-26384800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:26383200-26384800	Active TSS	GM12878-XiMat	blood
20	chr6:26383400-26384200	Active TSS	Small Intestine	intestine
21	chr6:26383600-26384200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr6:26383600-26384200	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr6:26383600-26384200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
24	chr6:26383600-26384200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:26383600-26384200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr6:26383600-26384200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:26383600-26384200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr6:26383600-26384200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:26383600-26384200	Flanking Active TSS	Liver	Liver
30	chr6:26383600-26384200	Flanking Active TSS	Brain Hippocampus Middle	brain
31	chr6:26383600-26384200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr6:26383600-26384200	Flanking Active TSS	Placenta	Placenta
33	chr6:26383600-26384200	Flanking Active TSS	Fetal Stomach	stomach
34	chr6:26383600-26384200	Flanking Active TSS	Fetal Thymus	thymus
35	chr6:26383600-26384200	Flanking Active TSS	HSMM	muscle
36	chr6:26383600-26384400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:26383600-26384400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr6:26383600-26384400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:26383600-26384400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr6:26383600-26384400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:26383600-26384400	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr6:26383600-26384600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:26383600-26384600	Flanking Active TSS	Dnd41	blood
44	chr6:26383600-26384600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr6:26383800-26384200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr6:26383800-26384200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
47	chr6:26383800-26384200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
48	chr6:26383800-26384200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr6:26383800-26384200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:26383800-26384200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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