Variant report

Variant	rs73736664
Chromosome Location	chr5:5481788-5481789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:5481094..5482017-chr6:1551963..1552934,2	MCF-7	breast:
2	chr5:5481130..5482758-chr5:5483384..5486103,2	MCF-7	breast:
3	chr5:5480560..5482394-chr5:5485667..5488011,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10462631	1.00[EUR][1000 genomes]
rs1473230	0.86[EUR][1000 genomes]
rs16875584	1.00[EUR][1000 genomes]
rs16875589	0.81[EUR][1000 genomes]
rs16875590	0.81[EUR][1000 genomes]
rs16875597	1.00[EUR][1000 genomes]
rs16875617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875618	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875619	1.00[EUR][1000 genomes]
rs16900246	1.00[EUR][1000 genomes]
rs16900247	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2306349	1.00[EUR][1000 genomes]
rs35190184	0.95[EUR][1000 genomes]
rs3747730	0.99[ASN][1000 genomes]
rs3806873	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3806874	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4283757	0.95[EUR][1000 genomes]
rs4702268	0.95[EUR][1000 genomes]
rs4702269	0.95[EUR][1000 genomes]
rs4702270	1.00[EUR][1000 genomes]
rs4702271	1.00[EUR][1000 genomes]
rs6874736	0.95[EUR][1000 genomes]
rs72646678	1.00[EUR][1000 genomes]
rs728079	0.86[EUR][1000 genomes]
rs7713294	0.91[EUR][1000 genomes]
rs7713609	0.81[EUR][1000 genomes]
rs7714569	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757981	chr5:5447098-5764620	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2759319	chr5:5447098-5764620	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5433400-5495200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:5458600-5495000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:5462400-5494600	Weak transcription	Colonic Mucosa	Colon
4	chr5:5463000-5493800	Weak transcription	Fetal Heart	heart
5	chr5:5463800-5483600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:5465200-5482600	Weak transcription	Gastric	stomach
7	chr5:5465200-5493800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:5465200-5495000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:5467600-5488800	Weak transcription	Brain Substantia Nigra	brain
10	chr5:5468000-5494000	Weak transcription	Fetal Brain Male	brain
11	chr5:5470400-5492600	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:5472800-5490600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:5475400-5482600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:5475400-5487000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:5475400-5492400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:5475400-5494000	Weak transcription	Fetal Intestine Small	intestine
17	chr5:5475400-5495000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:5476000-5487200	Weak transcription	HSMMtube	muscle
19	chr5:5476000-5490000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr5:5476000-5490800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:5476200-5488000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:5476600-5484800	Weak transcription	Primary B cells from cord blood	blood
23	chr5:5476800-5483400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr5:5476800-5486000	Weak transcription	HMEC	breast
25	chr5:5476800-5487000	Weak transcription	Brain Anterior Caudate	brain
26	chr5:5476800-5487000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr5:5476800-5492600	Weak transcription	A549	lung
28	chr5:5477000-5482000	Weak transcription	Liver	Liver
29	chr5:5477000-5482200	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr5:5477000-5482600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr5:5477000-5482600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:5477000-5482600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr5:5477000-5482600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr5:5477000-5482600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr5:5477000-5482600	Weak transcription	Lung	lung
36	chr5:5477000-5482600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr5:5477000-5483400	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr5:5477000-5483600	Weak transcription	Fetal Muscle Leg	muscle
39	chr5:5477000-5484200	Weak transcription	Osteobl	bone
40	chr5:5477000-5484800	Weak transcription	Aorta	Aorta
41	chr5:5477000-5484800	Weak transcription	HUVEC	blood vessel
42	chr5:5477000-5486200	Weak transcription	Pancreas	Pancrea
43	chr5:5477000-5486600	Weak transcription	Brain Hippocampus Middle	brain
44	chr5:5477000-5486800	Weak transcription	Fetal Stomach	stomach
45	chr5:5477000-5487000	Weak transcription	Fetal Brain Female	brain
46	chr5:5477000-5487200	Weak transcription	Spleen	Spleen
47	chr5:5477000-5487400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:5477000-5490800	Weak transcription	Esophagus	oesophagus
49	chr5:5477000-5492600	Weak transcription	Rectal Smooth Muscle	rectum
50	chr5:5477000-5494000	Weak transcription	Psoas Muscle	Psoas

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