Variant report

Variant	rs4702270
Chromosome Location	chr5:5491193-5491194
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:5490039..5492342-chr5:6711628..6713432,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10462631	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1473230	1.00[CEU][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16875568	0.94[CHB][hapmap];0.83[JPT][hapmap];0.98[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16875578	0.89[CHB][hapmap];0.84[JPT][hapmap];0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16875584	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16875589	0.89[CHB][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16875590	0.89[CHB][hapmap];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16875597	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16875609	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs16875617	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16875618	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16875619	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900246	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16900247	0.81[EUR][1000 genomes]
rs2306349	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35190184	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3806873	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3806874	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4283757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4701700	0.96[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4702268	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4702269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4702271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6874736	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72646678	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs728079	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73736664	1.00[EUR][1000 genomes]
rs7713294	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7713609	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7714569	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757981	chr5:5447098-5764620	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2759319	chr5:5447098-5764620	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5433400-5495200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:5458600-5495000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:5462400-5494600	Weak transcription	Colonic Mucosa	Colon
4	chr5:5463000-5493800	Weak transcription	Fetal Heart	heart
5	chr5:5465200-5493800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:5465200-5495000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:5468000-5494000	Weak transcription	Fetal Brain Male	brain
8	chr5:5470400-5492600	Weak transcription	Colon Smooth Muscle	Colon
9	chr5:5475400-5492400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:5475400-5494000	Weak transcription	Fetal Intestine Small	intestine
11	chr5:5475400-5495000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:5476800-5492600	Weak transcription	A549	lung
13	chr5:5477000-5492600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:5477000-5494000	Weak transcription	Psoas Muscle	Psoas
15	chr5:5477000-5494200	Weak transcription	Fetal Kidney	kidney
16	chr5:5477000-5494400	Weak transcription	Small Intestine	intestine
17	chr5:5477000-5494400	Weak transcription	NHLF	lung
18	chr5:5477000-5494600	Weak transcription	Right Ventricle	heart
19	chr5:5477200-5493800	Weak transcription	NHDF-Ad	bronchial
20	chr5:5477200-5497600	Weak transcription	Brain Angular Gyrus	brain
21	chr5:5479000-5492200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:5481000-5491200	Strong transcription	Adipose Nuclei	Adipose
23	chr5:5481000-5491400	Strong transcription	Dnd41	blood
24	chr5:5481200-5494000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr5:5481400-5491400	Strong transcription	Hela-S3	cervix
26	chr5:5482000-5492400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr5:5482000-5494000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr5:5482000-5494000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr5:5482000-5494200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:5482200-5494000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr5:5482200-5495000	Weak transcription	NHEK	skin
32	chr5:5482400-5491400	Strong transcription	Primary T cells from cord blood	blood
33	chr5:5482800-5497600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:5484000-5494000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr5:5484600-5491200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr5:5484800-5491200	Strong transcription	Primary B cells from cord blood	blood
37	chr5:5484800-5493000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr5:5485200-5494600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr5:5486000-5491400	Strong transcription	Lung	lung
40	chr5:5486200-5491200	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr5:5486200-5491200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr5:5486600-5492200	Weak transcription	Pancreas	Pancrea
43	chr5:5486800-5491400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr5:5486800-5491400	Strong transcription	Fetal Stomach	stomach
45	chr5:5487200-5494400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr5:5487400-5492200	Weak transcription	K562	blood
47	chr5:5487400-5494600	Weak transcription	Brain Anterior Caudate	brain
48	chr5:5487400-5494600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr5:5487400-5495000	Weak transcription	Gastric	stomach
50	chr5:5487600-5492400	Weak transcription	Osteobl	bone

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