Variant report

Variant	rs73739541
Chromosome Location	chr6:27060174-27060175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27057895..27061328-chr6:27066502..27071187,4	K562	blood:
2	chr6:27059768..27062179-chr6:27105200..27107786,2	K562	blood:
3	chr6:27058692..27062326-chr6:27090453..27093462,4	K562	blood:
4	chr6:26987792..26989397-chr6:27058823..27061431,2	K562	blood:
5	chr6:27058371..27061337-chr6:27088383..27090368,3	K562	blood:
6	chr6:27058239..27061068-chr6:27078471..27081139,3	K562	blood:
7	chr6:27059053..27062446-chr6:27100133..27102654,3	K562	blood:
8	chr6:26563515..26565648-chr6:27059031..27061634,2	K562	blood:
9	chr6:27059758..27061626-chr6:27062610..27064960,3	MCF-7	breast:
10	chr6:26569051..26574263-chr6:27058255..27061104,5	K562	blood:
11	chr6:27057693..27062553-chr6:27083380..27087822,4	K562	blood:
12	chr6:27059752..27061328-chr6:27065791..27068002,2	K562	blood:
13	chr6:26568519..26570551-chr6:27058352..27060839,2	K562	blood:
14	chr6:27059680..27061954-chr6:27093717..27096433,2	K562	blood:
15	chr6:27059239..27061563-chr6:27114621..27116383,2	K562	blood:
16	chr6:26102844..26105827-chr6:27059627..27062018,2	K562	blood:
17	chr6:27058956..27061096-chr6:27102965..27105025,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000196787	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000224843	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000238621	Chromatin interaction
ENSG00000272468	Chromatin interaction
ENSG00000265565	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10484393	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751689	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11751711	1.00[AMR][1000 genomes]
rs11753970	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11755181	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11757483	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11758093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12110621	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12111326	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16894088	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16894325	1.00[EUR][1000 genomes]
rs2008668	1.00[EUR][1000 genomes]
rs2393823	1.00[EUR][1000 genomes]
rs2393912	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2393913	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2393914	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36002224	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4278000	1.00[EUR][1000 genomes]
rs4602717	1.00[EUR][1000 genomes]
rs55792674	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56051102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56065824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56258900	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56970208	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57331553	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57930834	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58104274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59159741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59405634	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59701289	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60614605	1.00[EUR][1000 genomes]
rs61050868	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61745028	1.00[EUR][1000 genomes]
rs6932003	1.00[EUR][1000 genomes]
rs73739525	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739535	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739536	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739539	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739543	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739544	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739551	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739552	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739553	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739560	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739563	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739565	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739569	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739571	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739574	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739583	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739584	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739601	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7751878	1.00[EUR][1000 genomes]
rs7770815	1.00[EUR][1000 genomes]
rs9357029	1.00[EUR][1000 genomes]
rs9368487	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	esv2758038	chr6:26695219-27095714	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
3	esv2759410	chr6:26695219-27095714	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
4	nsv1029124	chr6:26825468-27109774	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	244 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27059200-27060400	Active TSS	K562	blood
2	chr6:27059200-27060800	Active TSS	A549	lung
3	chr6:27059400-27060200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr6:27059400-27060200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr6:27059400-27060200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:27059400-27060200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
7	chr6:27059400-27060200	Active TSS	Hela-S3	cervix
8	chr6:27059400-27060400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:27059400-27060600	Active TSS	H1 Cell Line	embryonic stem cell
10	chr6:27059400-27060600	Active TSS	H9 Cell Line	embryonic stem cell
11	chr6:27059400-27060600	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr6:27059600-27060200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr6:27059600-27060200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:27059600-27060200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:27059600-27060200	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:27059600-27060200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:27059600-27060200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:27059600-27060200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
19	chr6:27059600-27060200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:27059600-27060200	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr6:27059600-27060200	Bivalent/Poised TSS	Brain Anterior Caudate	brain
22	chr6:27059600-27060200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
23	chr6:27059600-27060200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
24	chr6:27059600-27060200	Enhancers	Brain Substantia Nigra	brain
25	chr6:27059600-27060200	Enhancers	Esophagus	oesophagus
26	chr6:27059600-27060200	Bivalent Enhancer	Fetal Heart	heart
27	chr6:27059600-27060200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
28	chr6:27059600-27060200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
29	chr6:27059600-27060200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
30	chr6:27059600-27060400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:27059600-27060400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:27059600-27060400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:27059600-27060400	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr6:27059600-27060400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:27059600-27060400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:27059600-27060400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:27059600-27060400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:27059600-27060400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr6:27059600-27060400	Flanking Bivalent TSS/Enh	Dnd41	blood
40	chr6:27059600-27060400	Bivalent/Poised TSS	HepG2	liver
41	chr6:27059600-27060400	Flanking Active TSS	HUVEC	blood vessel
42	chr6:27059600-27060400	Active TSS	NH-A	brain
43	chr6:27059600-27060400	Active TSS	NHDF-Ad	bronchial
44	chr6:27059600-27060600	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr6:27059600-27060600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:27059600-27060600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:27059600-27060600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:27059600-27060600	Active TSS	HSMMtube	muscle
49	chr6:27059800-27060200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:27059800-27060200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

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