Variant report

Variant	rs73739588
Chromosome Location	chr7:145930334-145930335
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1405119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2030837	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55671361	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56370721	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57167341	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59474676	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59979571	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60890308	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464742	1.00[AMR][1000 genomes]
rs6960657	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964497	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6965767	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737998	1.00[AMR][1000 genomes]
rs73739511	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739513	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739520	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739529	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739542	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739548	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739554	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739555	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739556	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739559	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739562	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739566	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739568	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739570	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739572	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739573	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739575	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739576	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739577	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739579	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7777062	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7777186	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7778234	1.00[AMR][1000 genomes]
rs7778508	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7781244	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7781862	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7797328	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv981604	chr7:145773003-145935052	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv889386	chr7:145845418-145935428	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1030541	chr7:145883107-146022564	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv5992	chr7:145922744-145967420	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv608928	chr7:145928429-145952946	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145911200-145932000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:145911400-145932000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:145911600-145932000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:145912600-145945200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:145918800-145942600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:145922800-145943600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:145925400-145931800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr7:145925400-145935200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:145925600-145932800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:145925800-145931800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:145927000-145931800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:145927200-145932400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:145927400-145931800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:145930200-145931800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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