Variant report

Variant	rs7778234
Chromosome Location	chr7:145873616-145873617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:145872793..145874958-chr7:145879839..145881542,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1405119	1.00[AMR][1000 genomes]
rs2030837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55671361	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56370721	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57167341	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59474676	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59979571	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60890308	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464742	1.00[AMR][1000 genomes]
rs6960657	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964497	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6965767	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737998	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739511	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739513	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739529	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739542	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739548	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739554	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739555	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739556	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739559	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739562	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739566	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739568	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739570	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739572	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739573	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739575	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739576	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739577	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739579	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739588	1.00[AMR][1000 genomes]
rs73739592	1.00[AMR][1000 genomes]
rs7777062	1.00[AMR][1000 genomes]
rs7777186	1.00[AMR][1000 genomes]
rs7778508	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7781244	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7781862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7797328	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023861	chr7:145606069-145910049	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539170	chr7:145606069-145910049	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv981604	chr7:145773003-145935052	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv608927	chr7:145803095-145882001	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv889386	chr7:145845418-145935428	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145873600-145874400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr7:145873600-145874400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:145873600-145874400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:145873600-145874600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:145873600-145874600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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