Variant report

Variant	rs7778508
Chromosome Location	chr7:145903862-145903863
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1405119	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2030837	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55671361	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56370721	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57167341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59474676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59979571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60890308	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464742	1.00[AMR][1000 genomes]
rs6464752	1.00[MEX][hapmap]
rs6960657	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964497	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6965767	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73737998	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739511	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739513	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739520	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739554	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739555	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739556	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739566	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739568	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739570	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739572	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739573	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739575	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739576	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739577	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739579	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739588	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73739592	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7777062	1.00[AMR][1000 genomes]
rs7777186	1.00[AMR][1000 genomes]
rs7778234	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7781244	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7781862	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7797328	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806934	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023861	chr7:145606069-145910049	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539170	chr7:145606069-145910049	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv981604	chr7:145773003-145935052	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv889386	chr7:145845418-145935428	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1030541	chr7:145883107-146022564	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145891600-145924800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:145896600-145912200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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