Variant report

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28175786..28178014-chr6:28179307..28182825,4	MCF-7	breast:
2	chr6:28122889..28124668-chr6:28176710..28180566,3	K562	blood:
3	chr6:28177601..28182191-chr6:28315411..28319291,5	K562	blood:
4	chr6:28103936..28106419-chr6:28177015..28179334,3	MCF-7	breast:
5	chr6:28104315..28106178-chr6:28177345..28180593,3	MCF-7	breast:
6	chr6:28177473..28179132-chr6:28218627..28221349,2	MCF-7	breast:
7	chr6:28103775..28107091-chr6:28177064..28180460,3	K562	blood:
8	chr6:27864015..27866427-chr6:28176005..28180203,3	K562	blood:
9	chr6:28176585..28178668-chr6:28184409..28186651,2	MCF-7	breast:
10	chr6:28154709..28159711-chr6:28172250..28177968,6	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1062169	0.83[ASN][1000 genomes]
rs1150698	0.96[EUR][1000 genomes]
rs1150699	0.96[EUR][1000 genomes]
rs1150704	0.96[EUR][1000 genomes]
rs1150713	0.83[ASN][1000 genomes]
rs1150714	0.83[ASN][1000 genomes]
rs1150717	0.83[ASN][1000 genomes]
rs1150720	0.83[ASN][1000 genomes]
rs11751702	0.81[AFR][1000 genomes]
rs11758148	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1233664	0.96[EUR][1000 genomes]
rs1233665	0.96[EUR][1000 genomes]
rs1233666	0.84[EUR][1000 genomes]
rs16893817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1736890	0.93[EUR][1000 genomes]
rs1736894	0.96[EUR][1000 genomes]
rs1778469	0.95[EUR][1000 genomes]
rs1778477	0.83[ASN][1000 genomes]
rs1778478	0.83[ASN][1000 genomes]
rs2185955	0.81[AFR][1000 genomes]
rs2235359	0.84[AFR][1000 genomes]
rs2281043	0.83[ASN][1000 genomes]
rs3800325	0.83[ASN][1000 genomes]
rs56053755	0.83[ASN][1000 genomes]
rs6456811	0.83[ASN][1000 genomes]
rs6923170	0.83[ASN][1000 genomes]
rs73740587	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7769054	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs993619	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883514	chr6:28155418-28185726	Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv883515	chr6:28156476-28181675	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv883516	chr6:28156476-28185726	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73740584	AL022393.7	cis	Thyroid	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28176800-28178200	Enhancers	NHEK	skin
2	chr6:28177400-28178000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
3	chr6:28177600-28178000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:28177600-28178200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:28177600-28178200	Enhancers	HMEC	breast
6	chr6:28177800-28178000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:28177800-28178000	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr6:28177800-28178000	Bivalent Enhancer	Psoas Muscle	Psoas
9	chr6:28177800-28178000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
10	chr6:28177800-28178000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
11	chr6:28177800-28178200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:28177800-28179200	Enhancers	K562	blood

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