Variant report

Variant	rs1150714
Chromosome Location	chr6:28262869-28262870
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28262644..28265417-chr6:28284862..28286533,2	MCF-7	breast:
2	chr6:28261083..28263249-chr6:28270818..28273469,2	K562	blood:
3	chr6:27775741..27778487-chr6:28261649..28263259,2	K562	blood:
4	chr6:28248023..28251832-chr6:28260376..28264199,6	K562	blood:
5	chr6:28255421..28258446-chr6:28262353..28265432,3	K562	blood:

Variant related genes	Relation type
ENSG00000196747	Chromatin interaction
ENSG00000137338	Chromatin interaction
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1062169	0.89[CEU][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1119211	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1150697	0.80[CEU][hapmap]
rs1150699	0.80[CEU][hapmap]
rs1150704	0.80[CEU][hapmap]
rs1150713	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150717	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1150719	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1150720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752073	0.89[CEU][hapmap]
rs1233664	0.80[CEU][hapmap]
rs1233665	0.80[CEU][hapmap]
rs1233666	0.80[CEU][hapmap]
rs13210258	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1474589	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs16893817	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16893937	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16901846	1.00[CEU][hapmap]
rs1736890	0.80[CEU][hapmap]
rs1778477	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1778478	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890809	0.89[CEU][hapmap]
rs2232422	1.00[CEU][hapmap]
rs2232428	0.89[CEU][hapmap]
rs2281043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622315	0.89[CEU][hapmap]
rs3800325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831267	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56053755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456814	0.80[ASN][1000 genomes]
rs6905368	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6917759	0.89[CEU][hapmap]
rs6923170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929559	0.89[CEU][hapmap]
rs73740584	0.83[ASN][1000 genomes]
rs73742542	0.93[EUR][1000 genomes]
rs7744788	1.00[CEU][hapmap]
rs7769054	0.80[CEU][hapmap]
rs993619	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28249800-28272200	Weak transcription	Spleen	Spleen
2	chr6:28250000-28277600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:28250000-28293800	Weak transcription	Gastric	stomach
4	chr6:28250200-28273800	Weak transcription	Thymus	Thymus
5	chr6:28250400-28265600	Weak transcription	Primary T cells from cord blood	blood
6	chr6:28250400-28278600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:28250600-28267000	Weak transcription	NHEK	skin
8	chr6:28250600-28270800	Weak transcription	Fetal Heart	heart
9	chr6:28250600-28280600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:28250800-28270000	Weak transcription	Psoas Muscle	Psoas
11	chr6:28250800-28276800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:28251000-28270800	Weak transcription	Colonic Mucosa	Colon
13	chr6:28251000-28273800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:28251000-28277200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:28251000-28278800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:28253400-28264400	Weak transcription	NHLF	lung
17	chr6:28253400-28264600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:28255200-28264400	Weak transcription	Aorta	Aorta
19	chr6:28255200-28268600	Weak transcription	Ovary	ovary
20	chr6:28255200-28271200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:28255200-28271600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:28255200-28278600	Weak transcription	Esophagus	oesophagus
23	chr6:28255200-28278600	Weak transcription	Pancreas	Pancrea
24	chr6:28255200-28278800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:28255200-28283000	Weak transcription	HSMMtube	muscle
26	chr6:28255200-28293800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:28255400-28271200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:28255400-28278400	Weak transcription	HepG2	liver
29	chr6:28255600-28264800	Weak transcription	HUVEC	blood vessel
30	chr6:28255600-28271400	Weak transcription	Placenta	Placenta
31	chr6:28255600-28272000	Weak transcription	Brain Substantia Nigra	brain
32	chr6:28256000-28267600	Weak transcription	Osteobl	bone
33	chr6:28256200-28264400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:28256200-28264400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr6:28256400-28264800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr6:28256400-28268400	Weak transcription	Fetal Intestine Large	intestine
37	chr6:28256400-28271600	Weak transcription	Liver	Liver
38	chr6:28256400-28277800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr6:28256600-28264400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:28256600-28264400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:28256600-28264400	Weak transcription	Fetal Intestine Small	intestine
42	chr6:28256600-28264600	Weak transcription	Fetal Lung	lung
43	chr6:28256600-28268200	Weak transcription	Lung	lung
44	chr6:28256600-28268600	Weak transcription	Fetal Thymus	thymus
45	chr6:28256600-28280800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:28257400-28264600	Weak transcription	Adipose Nuclei	Adipose
47	chr6:28257600-28264000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr6:28257600-28264400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr6:28257600-28264600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:28257600-28264600	Weak transcription	Brain Angular Gyrus	brain

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