Variant report

Variant	rs2622315
Chromosome Location	chr6:28152567-28152568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28151155..28153263-chr6:28178363..28180275,2	K562	blood:
2	chr6:28146868..28149346-chr6:28150403..28152659,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10484404	1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs1150685	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1150697	0.90[CEU][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs1150699	0.90[CEU][hapmap]
rs1150704	0.90[CEU][hapmap]
rs1150714	0.89[CEU][hapmap]
rs11752073	1.00[CEU][hapmap];0.82[MEX][hapmap];0.83[EUR][1000 genomes]
rs11758148	0.88[CEU][hapmap]
rs1233664	0.90[CEU][hapmap]
rs1233665	0.90[CEU][hapmap]
rs1233666	0.90[CEU][hapmap]
rs1233691	0.83[YRI][hapmap]
rs1233708	0.83[YRI][hapmap]
rs1474589	0.89[CEU][hapmap]
rs16893552	0.89[CEU][hapmap]
rs16893817	0.90[CEU][hapmap]
rs16893937	0.89[CEU][hapmap]
rs16901846	0.89[CEU][hapmap]
rs1736890	0.90[CEU][hapmap]
rs1736894	0.81[CEU][hapmap]
rs1890809	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2281043	0.89[CEU][hapmap]
rs3800325	0.89[CEU][hapmap]
rs4141691	0.89[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap]
rs56355079	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6456811	0.89[CEU][hapmap]
rs6917759	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6923170	0.89[CEU][hapmap]
rs6929559	1.00[CEU][hapmap];0.96[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73396550	0.80[EUR][1000 genomes]
rs73396583	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7739332	0.86[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7744788	0.89[CEU][hapmap]
rs7748445	0.89[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap]
rs7769054	0.90[CEU][hapmap]
rs993619	0.90[CEU][hapmap]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs2622315	PARD6B	trans	cerebellum	SCAN
rs2622315	ZNF165	cis	parietal	SCAN
rs2622315	AL022393.7	cis	Thyroid	GTEx
rs2622315		cis	Lymphoblastoid	GTEx
rs2622315	HIST1H4C	cis	parietal	SCAN
rs2622315	ZSCAN23	cis	parietal	SCAN
rs2622315	ZSCAN23	cis	cerebellum	SCAN
rs2622315	ZNF323	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28151800-28155200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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