Variant report

Variant	rs7744788
Chromosome Location	chr6:28257720-28257721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28255421..28258446-chr6:28262353..28265432,3	K562	blood:
2	chr6:28246849..28251135-chr6:28253254..28258623,13	K562	blood:
3	chr6:28255210..28257728-chr6:28316331..28318308,2	K562	blood:
4	chr6:28184805..28186411-chr6:28255755..28258597,2	K562	blood:
5	chr6:28255681..28258623-chr6:28265550..28268633,3	K562	blood:

Variant related genes	Relation type
ENSG00000189298	Chromatin interaction
ENSG00000137338	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1062169	0.89[CEU][hapmap]
rs1150697	0.80[CEU][hapmap]
rs1150699	0.80[CEU][hapmap]
rs1150704	0.80[CEU][hapmap]
rs1150714	1.00[CEU][hapmap]
rs11752073	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1233664	0.80[CEU][hapmap]
rs1233665	0.80[CEU][hapmap]
rs1233666	0.80[CEU][hapmap]
rs1474589	1.00[CEU][hapmap]
rs16893817	0.80[CEU][hapmap]
rs16893937	1.00[CEU][hapmap]
rs16901846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1736890	0.80[CEU][hapmap]
rs1890809	0.89[CEU][hapmap]
rs2232422	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2232428	0.89[CEU][hapmap]
rs2281043	1.00[CEU][hapmap]
rs2622315	0.89[CEU][hapmap]
rs3800325	1.00[CEU][hapmap]
rs6456811	1.00[CEU][hapmap]
rs6917759	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923170	1.00[CEU][hapmap]
rs6929559	0.89[CEU][hapmap]
rs7769054	0.80[CEU][hapmap]
rs993619	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28249800-28272200	Weak transcription	Spleen	Spleen
2	chr6:28250000-28258000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:28250000-28258600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:28250000-28277600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:28250000-28293800	Weak transcription	Gastric	stomach
6	chr6:28250200-28273800	Weak transcription	Thymus	Thymus
7	chr6:28250400-28265600	Weak transcription	Primary T cells from cord blood	blood
8	chr6:28250400-28278600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:28250600-28267000	Weak transcription	NHEK	skin
10	chr6:28250600-28270800	Weak transcription	Fetal Heart	heart
11	chr6:28250600-28280600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:28250800-28270000	Weak transcription	Psoas Muscle	Psoas
13	chr6:28250800-28276800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:28251000-28258200	Strong transcription	Fetal Muscle Leg	muscle
15	chr6:28251000-28258600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:28251000-28258600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:28251000-28270800	Weak transcription	Colonic Mucosa	Colon
18	chr6:28251000-28273800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:28251000-28277200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:28251000-28278800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:28251200-28258400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:28251200-28258400	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:28251200-28259000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:28251200-28259400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:28251400-28258000	Strong transcription	Fetal Brain Female	brain
26	chr6:28251400-28262200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:28251600-28258200	Strong transcription	Colon Smooth Muscle	Colon
28	chr6:28251600-28258200	Strong transcription	Fetal Muscle Trunk	muscle
29	chr6:28251600-28258400	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:28251600-28258400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:28251600-28258400	Strong transcription	Primary hematopoietic stem cells	blood
32	chr6:28251600-28258400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:28251800-28257800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr6:28251800-28258000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:28251800-28258600	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:28252000-28258000	Strong transcription	NH-A	brain
37	chr6:28252000-28258600	Strong transcription	Brain Germinal Matrix	brain
38	chr6:28252200-28258000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:28252400-28258000	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr6:28252400-28258200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:28252400-28259000	Strong transcription	HSMM	muscle
42	chr6:28252400-28259400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr6:28252800-28258000	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr6:28252800-28258400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:28253200-28258400	Strong transcription	Brain Hippocampus Middle	brain
46	chr6:28253400-28264400	Weak transcription	NHLF	lung
47	chr6:28253400-28264600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:28253800-28258600	Strong transcription	Fetal Brain Male	brain
49	chr6:28254600-28258000	Strong transcription	H1 Cell Line	embryonic stem cell
50	chr6:28254600-28258000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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