Variant report

Variant	rs6917759
Chromosome Location	chr6:28201364-28201365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28199310..28201659-chr6:28248722..28250391,2	K562	blood:
2	chr6:28200128..28202663-chr6:28235372..28237397,2	K562	blood:

Variant related genes	Relation type
ENSG00000137338	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484404	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs1150685	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1150697	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs1150699	0.90[CEU][hapmap]
rs1150704	0.90[CEU][hapmap]
rs1150714	0.89[CEU][hapmap]
rs11752073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758148	0.88[CEU][hapmap]
rs1233664	0.90[CEU][hapmap]
rs1233665	0.90[CEU][hapmap]
rs1233666	0.90[CEU][hapmap]
rs1474589	0.89[CEU][hapmap]
rs16893817	0.90[CEU][hapmap]
rs16893937	0.89[CEU][hapmap]
rs16901846	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1736890	0.90[CEU][hapmap]
rs1736894	0.81[CEU][hapmap]
rs1890809	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs2232422	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs2281043	0.89[CEU][hapmap]
rs2622315	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs3800325	0.89[CEU][hapmap]
rs6456811	0.89[CEU][hapmap]
rs6923170	0.89[CEU][hapmap]
rs6929559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7744788	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769054	0.90[CEU][hapmap]
rs993619	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28193600-28213400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:28193800-28204000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:28193800-28211800	Weak transcription	Fetal Thymus	thymus
4	chr6:28193800-28218400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:28193800-28218400	Weak transcription	Stomach Mucosa	stomach
6	chr6:28194000-28211000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:28194000-28211800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:28194000-28212800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:28194000-28213000	Weak transcription	Thymus	Thymus
10	chr6:28194000-28213600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:28194600-28207000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:28194800-28202800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:28194800-28202800	Strong transcription	Fetal Muscle Trunk	muscle
14	chr6:28194800-28202800	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr6:28194800-28204200	Strong transcription	Left Ventricle	heart
16	chr6:28194800-28205000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:28195000-28201400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:28195000-28201600	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:28195000-28201600	Strong transcription	Brain Inferior Temporal Lobe	brain
20	chr6:28195000-28201600	Strong transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:28195000-28201600	Strong transcription	HepG2	liver
22	chr6:28195000-28202000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:28195000-28202000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:28195000-28202000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:28195000-28202000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:28195000-28202000	Strong transcription	Stomach Smooth Muscle	stomach
27	chr6:28195000-28202200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:28195000-28202200	Strong transcription	Duodenum Mucosa	Duodenum
29	chr6:28195000-28202200	Strong transcription	Fetal Lung	lung
30	chr6:28195000-28202400	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:28195000-28202600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr6:28195000-28202600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:28195000-28202600	Strong transcription	Fetal Stomach	stomach
34	chr6:28195000-28202600	Strong transcription	NHLF	lung
35	chr6:28195000-28202800	Strong transcription	Liver	Liver
36	chr6:28195000-28203000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:28195000-28203000	Strong transcription	Fetal Intestine Large	intestine
38	chr6:28195000-28203200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:28195000-28203800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:28195200-28201600	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr6:28195200-28202000	Strong transcription	Colon Smooth Muscle	Colon
42	chr6:28195200-28202200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:28195200-28202200	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr6:28195200-28202200	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr6:28195200-28202400	Strong transcription	Fetal Muscle Leg	muscle
46	chr6:28195200-28202400	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr6:28195200-28202800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:28195200-28202800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:28195200-28202800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:28195200-28202800	Strong transcription	Adipose Nuclei	Adipose

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