Variant report

Variant	rs73743322
Chromosome Location	chr6:33700004-33700005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33697484..33700204-chr6:33739217..33741356,2	MCF-7	breast:
2	chr6:33699067..33701380-chr6:33760767..33763233,2	MCF-7	breast:
3	chr12:115690369..115693198-chr6:33698849..33701409,2	MCF-7	breast:
4	chr6:33698259..33701003-chr6:33736395..33738930,2	K562	blood:
5	chr6:33697890..33700582-chr6:35133101..35134719,2	MCF-7	breast:
6	chr6:33694998..33697623-chr6:33697893..33701266,3	K562	blood:
7	chr6:33673158..33676456-chr6:33698317..33701048,3	MCF-7	breast:
8	chr6:33699163..33701430-chr6:33753710..33757640,3	MCF-7	breast:
9	chr6:33684880..33685463-chr6:33699620..33700206,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs35506178	0.85[EUR][1000 genomes]
rs59957785	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743304	0.89[EUR][1000 genomes]
rs73743305	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73743309	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73743310	0.96[EUR][1000 genomes]
rs73743401	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744811	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469584	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469586	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33680000-33705000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:33686200-33700200	Weak transcription	Liver	Liver
3	chr6:33686400-33710600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:33690800-33708200	Weak transcription	Gastric	stomach
5	chr6:33691800-33711600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:33692000-33706800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:33692000-33710200	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:33692800-33701000	Weak transcription	Fetal Brain Female	brain
9	chr6:33693200-33700800	Strong transcription	Fetal Muscle Leg	muscle
10	chr6:33693400-33701200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:33693600-33712000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:33694000-33710600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:33695000-33702400	Weak transcription	Brain Anterior Caudate	brain
14	chr6:33695600-33711800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:33696600-33700400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:33697200-33700400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:33697800-33701000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:33698200-33700400	Enhancers	Lung	lung
19	chr6:33698200-33700600	Enhancers	Right Atrium	heart
20	chr6:33698200-33700800	Genic enhancers	Brain Substantia Nigra	brain
21	chr6:33698200-33700800	Strong transcription	Fetal Muscle Trunk	muscle
22	chr6:33698200-33701600	Genic enhancers	Left Ventricle	heart
23	chr6:33698200-33702400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:33698400-33703000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr6:33698400-33703400	Strong transcription	Spleen	Spleen
26	chr6:33698600-33700400	Strong transcription	Muscle Satellite Cultured Cells	--
27	chr6:33698600-33700800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:33698600-33701200	Genic enhancers	Brain Hippocampus Middle	brain
29	chr6:33698800-33700200	Weak transcription	K562	blood
30	chr6:33699200-33700200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:33699200-33710000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:33699400-33700200	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr6:33699400-33700400	Enhancers	Esophagus	oesophagus
34	chr6:33699400-33700600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:33699400-33701200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:33699400-33703600	Genic enhancers	Right Ventricle	heart
37	chr6:33699600-33700200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:33699600-33700600	Genic enhancers	Brain Cingulate Gyrus	brain
39	chr6:33699600-33701000	Weak transcription	Psoas Muscle	Psoas
40	chr6:33699600-33701200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:33699800-33700800	Enhancers	HMEC	breast
42	chr6:33699800-33701000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:33699800-33708000	Weak transcription	Fetal Lung	lung
44	chr6:33700000-33700200	Enhancers	Fetal Intestine Large	intestine
45	chr6:33700000-33700600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:33700000-33700600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr6:33700000-33700600	Genic enhancers	HSMM	muscle
48	chr6:33700000-33700600	Genic enhancers	HSMMtube	muscle
49	chr6:33700000-33701600	Genic enhancers	Placenta	Placenta
50	chr6:33700000-33701600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle

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