Variant report

Variant	rs9469584
Chromosome Location	chr6:33720491-33720492
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33716339..33718019-chr6:33719542..33721066,2	K562	blood:
2	chr6:33693249..33695267-chr6:33719623..33721316,2	K562	blood:
3	chr6:33717351..33720634-chr6:33722895..33725009,3	K562	blood:
4	chr6:33704352..33707039-chr6:33718768..33721610,2	MCF-7	breast:
5	chr6:33711960..33715900-chr6:33717224..33721956,7	MCF-7	breast:
6	chr6:33717929..33721430-chr6:33728075..33731260,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161896	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs16869456	0.82[EUR][1000 genomes]
rs16869459	0.82[EUR][1000 genomes]
rs16869464	0.82[EUR][1000 genomes]
rs16869466	0.82[EUR][1000 genomes]
rs57303110	0.82[EUR][1000 genomes]
rs59957785	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60447213	0.82[EUR][1000 genomes]
rs6923565	0.82[EUR][1000 genomes]
rs6929527	0.82[EUR][1000 genomes]
rs6942022	0.82[EUR][1000 genomes]
rs73743304	0.89[EUR][1000 genomes]
rs73743305	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73743309	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73743310	0.87[EUR][1000 genomes]
rs73743322	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743323	0.82[EUR][1000 genomes]
rs73743326	0.82[EUR][1000 genomes]
rs73743328	0.82[EUR][1000 genomes]
rs73743331	0.82[EUR][1000 genomes]
rs73743333	0.82[EUR][1000 genomes]
rs73743334	0.82[EUR][1000 genomes]
rs73743336	0.82[EUR][1000 genomes]
rs73743401	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs767894	1.00[CHB][hapmap]
rs7744811	1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469578	0.82[EUR][1000 genomes]
rs9469580	0.82[EUR][1000 genomes]
rs9469582	0.82[EUR][1000 genomes]
rs9469586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv462897	chr6:33717770-33778964	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv602839	chr6:33717770-33778964	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33714800-33720600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:33714800-33721000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:33714800-33722600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:33715000-33720600	Enhancers	Fetal Muscle Leg	muscle
5	chr6:33715200-33737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:33715600-33729400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:33716400-33720600	Enhancers	Placenta	Placenta
8	chr6:33716600-33720600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:33717000-33723000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:33718000-33721000	Enhancers	Stomach Mucosa	stomach
11	chr6:33718200-33720600	Enhancers	Fetal Intestine Large	intestine
12	chr6:33718200-33720800	Enhancers	Fetal Lung	lung
13	chr6:33718400-33720600	Enhancers	Esophagus	oesophagus
14	chr6:33718400-33721000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:33718400-33721200	Enhancers	Fetal Thymus	thymus
16	chr6:33718400-33721400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr6:33718600-33720600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:33718600-33720600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:33718600-33720800	Enhancers	HMEC	breast
20	chr6:33718600-33721000	Enhancers	Colonic Mucosa	Colon
21	chr6:33718600-33721000	Enhancers	Fetal Intestine Small	intestine
22	chr6:33718800-33720600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:33718800-33721000	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr6:33719000-33720600	Bivalent Enhancer	HepG2	liver
25	chr6:33719200-33721400	Enhancers	Pancreas	Pancrea
26	chr6:33719200-33723600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr6:33719400-33720800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:33719400-33722200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:33719600-33720600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:33719600-33720600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:33719600-33720600	Enhancers	NHEK	skin
32	chr6:33719600-33729000	Weak transcription	Right Atrium	heart
33	chr6:33719800-33720600	Enhancers	GM12878-XiMat	blood
34	chr6:33719800-33727600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:33719800-33729200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:33720200-33720600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:33720200-33722400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr6:33720200-33722600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:33720200-33723000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:33720200-33728000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr6:33720200-33730600	Weak transcription	Spleen	Spleen
42	chr6:33720400-33720600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:33720400-33723000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:33720400-33728000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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