Variant report

Variant	rs9469582
Chromosome Location	chr6:33715939-33715940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:33715924-33717106	ECC-1	luminal epithelium:	n/a	chr6:33716590-33716599

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33715170..33717899-chr6:33734548..33736786,2	MCF-7	breast:
2	chr6:33708535..33711845-chr6:33715070..33719242,6	MCF-7	breast:

Variant related genes	Relation type
IP6K3	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16869456	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869458	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869459	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869463	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16869464	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16869466	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57303110	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59957785	0.84[EUR][1000 genomes]
rs60447213	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6923565	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6929527	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6942022	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73743323	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73743326	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73743328	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73743329	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73743330	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73743331	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73743333	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73743334	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73743336	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73743398	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73743401	0.84[EUR][1000 genomes]
rs9469578	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469580	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469581	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469584	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33710800-33716600	Active TSS	Psoas Muscle	Psoas
2	chr6:33712000-33717000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:33712000-33717800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:33712400-33719600	Weak transcription	Gastric	stomach
5	chr6:33714200-33718400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:33714200-33719200	Weak transcription	Pancreas	Pancrea
7	chr6:33714400-33718000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:33714600-33716600	Weak transcription	Fetal Thymus	thymus
9	chr6:33714600-33716800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:33714800-33716000	Enhancers	Placenta	Placenta
11	chr6:33714800-33716000	Flanking Active TSS	HSMM	muscle
12	chr6:33714800-33716600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr6:33714800-33717000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:33714800-33717000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
15	chr6:33714800-33718000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:33714800-33718200	Weak transcription	Right Atrium	heart
17	chr6:33714800-33718400	Weak transcription	Esophagus	oesophagus
18	chr6:33714800-33718400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:33714800-33718400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:33714800-33718600	Weak transcription	Colonic Mucosa	Colon
21	chr6:33714800-33718800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr6:33714800-33719200	Weak transcription	Lung	lung
23	chr6:33714800-33720600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:33714800-33721000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:33714800-33722600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:33715000-33716000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr6:33715000-33716600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:33715000-33717000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:33715000-33718600	Weak transcription	Spleen	Spleen
30	chr6:33715000-33718600	Weak transcription	HMEC	breast
31	chr6:33715000-33720600	Enhancers	Fetal Muscle Leg	muscle
32	chr6:33715200-33716200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:33715200-33716400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
34	chr6:33715200-33718200	Weak transcription	NHLF	lung
35	chr6:33715200-33718400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:33715200-33737800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:33715400-33718600	Weak transcription	Right Ventricle	heart
38	chr6:33715600-33716000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:33715600-33718000	Weak transcription	Liver	Liver
40	chr6:33715600-33718200	Weak transcription	Fetal Lung	lung
41	chr6:33715600-33718600	Weak transcription	Fetal Intestine Small	intestine
42	chr6:33715600-33719400	Weak transcription	Left Ventricle	heart
43	chr6:33715600-33719600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:33715600-33729400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr6:33715800-33716000	Bivalent Enhancer	Fetal Stomach	stomach
46	chr6:33715800-33716200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:33715800-33716200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:33715800-33717600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr6:33715800-33717600	Weak transcription	HSMMtube	muscle
50	chr6:33715800-33718200	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links