Variant report

Variant	rs73743330
Chromosome Location	chr6:33713971-33713972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33706241..33709561-chr6:33709640..33714031,4	MCF-7	breast:
2	chr6:33712841..33714419-chr6:33746721..33749211,2	K562	blood:
3	chr6:33711077..33714000-chr6:33723904..33727038,3	MCF-7	breast:
4	chr6:33712629..33714583-chr6:33734231..33736589,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16869456	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869458	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869459	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869463	1.00[ASN][1000 genomes]
rs16869464	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869466	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57303110	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59957785	0.82[EUR][1000 genomes]
rs60447213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923565	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929527	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942022	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73743323	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73743326	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73743328	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743329	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743331	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743333	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743334	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743336	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743398	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743401	0.82[EUR][1000 genomes]
rs9469578	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469580	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469581	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469582	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33706600-33715800	Enhancers	Fetal Intestine Large	intestine
2	chr6:33707400-33714000	Weak transcription	Spleen	Spleen
3	chr6:33710600-33715200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:33710800-33714200	Enhancers	Pancreas	Pancrea
5	chr6:33710800-33716600	Active TSS	Psoas Muscle	Psoas
6	chr6:33711200-33715600	Enhancers	Fetal Intestine Small	intestine
7	chr6:33711600-33714000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr6:33711600-33714200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:33711800-33714400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:33711800-33714600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:33711800-33714600	Enhancers	NHEK	skin
12	chr6:33711800-33715000	Active TSS	Left Ventricle	heart
13	chr6:33711800-33715200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:33711800-33715600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:33711800-33715800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:33712000-33714000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:33712000-33714400	Enhancers	Placenta Amnion	Placenta Amnion
18	chr6:33712000-33714600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:33712000-33714600	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:33712000-33715000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr6:33712000-33715400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr6:33712000-33717000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:33712000-33717800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:33712200-33714400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr6:33712200-33714800	Enhancers	Fetal Stomach	stomach
26	chr6:33712200-33714800	Active TSS	Right Atrium	heart
27	chr6:33712200-33715200	Enhancers	NHLF	lung
28	chr6:33712400-33714000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:33712400-33714200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:33712400-33714200	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr6:33712400-33714400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:33712400-33714600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:33712400-33714800	Active TSS	Right Ventricle	heart
34	chr6:33712400-33714800	Enhancers	A549	lung
35	chr6:33712400-33715000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:33712400-33715000	Active TSS	Brain Hippocampus Middle	brain
37	chr6:33712400-33715000	Active TSS	Brain Substantia Nigra	brain
38	chr6:33712400-33715600	Enhancers	Duodenum Mucosa	Duodenum
39	chr6:33712400-33719600	Weak transcription	Gastric	stomach
40	chr6:33712600-33714400	Weak transcription	Stomach Mucosa	stomach
41	chr6:33712600-33714800	Active TSS	HSMM	muscle
42	chr6:33712600-33714800	Active TSS	HSMMtube	muscle
43	chr6:33712600-33715000	Active TSS	Brain Angular Gyrus	brain
44	chr6:33712800-33714800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:33712800-33715000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:33712800-33715000	Flanking Active TSS	Fetal Muscle Leg	muscle
47	chr6:33712800-33715200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:33712800-33715200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
49	chr6:33712800-33715600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
50	chr6:33713000-33714000	Enhancers	Colon Smooth Muscle	Colon

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