Variant report

Variant	rs16869463
Chromosome Location	chr6:33714983-33714984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr6:33714212-33715004	ECC-1	luminal epithelium:	n/a	n/a
2	MAZ	chr6:33713785-33715357	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
IP6K3	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1408501	1.00[JPT][hapmap]
rs16869456	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16869458	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16869459	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16869464	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16869466	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57303110	0.93[ASN][1000 genomes]
rs60447213	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6923565	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6929527	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6942022	0.89[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs73743323	0.93[ASN][1000 genomes]
rs73743326	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs73743328	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73743329	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73743330	1.00[ASN][1000 genomes]
rs73743331	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73743333	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73743334	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73743336	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73743398	1.00[ASN][1000 genomes]
rs9469578	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9469580	0.89[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9469581	0.93[ASN][1000 genomes]
rs9469582	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33706600-33715800	Enhancers	Fetal Intestine Large	intestine
2	chr6:33710600-33715200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:33710800-33716600	Active TSS	Psoas Muscle	Psoas
4	chr6:33711200-33715600	Enhancers	Fetal Intestine Small	intestine
5	chr6:33711800-33715000	Active TSS	Left Ventricle	heart
6	chr6:33711800-33715200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:33711800-33715600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:33711800-33715800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:33712000-33715000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:33712000-33715400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
11	chr6:33712000-33717000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:33712000-33717800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:33712200-33715200	Enhancers	NHLF	lung
14	chr6:33712400-33715000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:33712400-33715000	Active TSS	Brain Hippocampus Middle	brain
16	chr6:33712400-33715000	Active TSS	Brain Substantia Nigra	brain
17	chr6:33712400-33715600	Enhancers	Duodenum Mucosa	Duodenum
18	chr6:33712400-33719600	Weak transcription	Gastric	stomach
19	chr6:33712600-33715000	Active TSS	Brain Angular Gyrus	brain
20	chr6:33712800-33715000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:33712800-33715000	Flanking Active TSS	Fetal Muscle Leg	muscle
22	chr6:33712800-33715200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:33712800-33715200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
24	chr6:33712800-33715600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr6:33713000-33715000	Enhancers	HMEC	breast
26	chr6:33713200-33715200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr6:33713200-33715200	Enhancers	Fetal Heart	heart
28	chr6:33713400-33715000	Active TSS	Brain Anterior Caudate	brain
29	chr6:33713400-33715000	Active TSS	Brain Cingulate Gyrus	brain
30	chr6:33713400-33715000	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr6:33713400-33715000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:33713800-33715000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:33713800-33715200	Flanking Active TSS	Fetal Lung	lung
34	chr6:33714000-33715200	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr6:33714200-33715200	Enhancers	H9 Cell Line	embryonic stem cell
36	chr6:33714200-33718400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:33714200-33719200	Weak transcription	Pancreas	Pancrea
38	chr6:33714400-33715000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr6:33714400-33715200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
40	chr6:33714400-33718000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:33714600-33715000	Enhancers	Spleen	Spleen
42	chr6:33714600-33715200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:33714600-33715200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:33714600-33716600	Weak transcription	Fetal Thymus	thymus
45	chr6:33714600-33716800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr6:33714800-33715000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr6:33714800-33715000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:33714800-33715000	Flanking Bivalent TSS/Enh	HepG2	liver
49	chr6:33714800-33715200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:33714800-33715200	Enhancers	Fetal Kidney	kidney

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