Variant report

Variant	rs73743326
Chromosome Location	chr6:33709980-33709981
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33706241..33709561-chr6:33709640..33714031,4	MCF-7	breast:
2	chr6:33708694..33710403-chr6:33728367..33730684,2	MCF-7	breast:
3	chr6:33708535..33711845-chr6:33715070..33719242,6	MCF-7	breast:
4	chr6:33704170..33706170-chr6:33708932..33711756,3	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16869456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16869458	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16869459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16869463	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs16869464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16869466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57303110	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59957785	0.84[EUR][1000 genomes]
rs60447213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6923565	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6929527	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6942022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73743323	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73743328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73743329	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73743330	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73743331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73743333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73743334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73743336	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73743398	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73743401	0.84[EUR][1000 genomes]
rs9469578	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469580	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9469581	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9469582	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9469584	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33686400-33710600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:33691800-33711600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:33692000-33710200	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:33693600-33712000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:33694000-33710600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:33695600-33711800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:33699200-33710000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:33702000-33710000	Genic enhancers	HSMM	muscle
9	chr6:33705400-33712000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:33705800-33711000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:33706600-33715800	Enhancers	Fetal Intestine Large	intestine
12	chr6:33706800-33711400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr6:33707000-33710200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:33707200-33710000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:33707200-33711400	Enhancers	Fetal Brain Male	brain
16	chr6:33707400-33714000	Weak transcription	Spleen	Spleen
17	chr6:33707600-33711000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:33707800-33710200	Enhancers	Brain Substantia Nigra	brain
19	chr6:33707800-33710600	Genic enhancers	Muscle Satellite Cultured Cells	--
20	chr6:33708000-33710200	Weak transcription	Psoas Muscle	Psoas
21	chr6:33708200-33710400	Enhancers	Stomach Mucosa	stomach
22	chr6:33708600-33710000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:33708600-33710800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:33708600-33711600	Weak transcription	HMEC	breast
25	chr6:33708800-33710000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
26	chr6:33708800-33710400	Weak transcription	Fetal Lung	lung
27	chr6:33709000-33710000	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:33709000-33710600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:33709000-33710600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr6:33709000-33711400	Weak transcription	Liver	Liver
31	chr6:33709000-33711600	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:33709000-33711600	Weak transcription	HepG2	liver
33	chr6:33709000-33711800	Weak transcription	Hela-S3	cervix
34	chr6:33709000-33712000	Weak transcription	Gastric	stomach
35	chr6:33709000-33712400	Weak transcription	Fetal Heart	heart
36	chr6:33709200-33710000	Weak transcription	Left Ventricle	heart
37	chr6:33709200-33710000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
38	chr6:33709200-33710200	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:33709200-33710200	Weak transcription	Lung	lung
40	chr6:33709200-33710400	Weak transcription	Fetal Brain Female	brain
41	chr6:33709200-33710600	Weak transcription	Brain Angular Gyrus	brain
42	chr6:33709200-33710600	Weak transcription	Brain Anterior Caudate	brain
43	chr6:33709200-33710800	Weak transcription	Pancreas	Pancrea
44	chr6:33709200-33711800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:33709400-33710400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:33709800-33710000	Enhancers	Fetal Muscle Trunk	muscle
47	chr6:33709800-33710000	Active TSS	Right Ventricle	heart
48	chr6:33709800-33710200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:33709800-33710200	Enhancers	Fetal Intestine Small	intestine
50	chr6:33709800-33710200	Genic enhancers	Right Atrium	heart

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