Variant report

Variant	rs60447213
Chromosome Location	chr6:33715159-33715160
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr6:33713785-33715357	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33708535..33711845-chr6:33715070..33719242,6	MCF-7	breast:

Variant related genes	Relation type
IP6K3	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16869456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869458	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869463	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16869464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57303110	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59957785	0.84[EUR][1000 genomes]
rs6923565	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929527	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942022	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73743323	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73743326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73743328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743329	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743330	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743336	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743398	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743401	0.84[EUR][1000 genomes]
rs9469578	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469580	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469581	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469582	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469584	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33706600-33715800	Enhancers	Fetal Intestine Large	intestine
2	chr6:33710600-33715200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:33710800-33716600	Active TSS	Psoas Muscle	Psoas
4	chr6:33711200-33715600	Enhancers	Fetal Intestine Small	intestine
5	chr6:33711800-33715200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:33711800-33715600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:33711800-33715800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:33712000-33715400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr6:33712000-33717000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:33712000-33717800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:33712200-33715200	Enhancers	NHLF	lung
12	chr6:33712400-33715600	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:33712400-33719600	Weak transcription	Gastric	stomach
14	chr6:33712800-33715200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr6:33712800-33715200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
16	chr6:33712800-33715600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr6:33713200-33715200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr6:33713200-33715200	Enhancers	Fetal Heart	heart
19	chr6:33713800-33715200	Flanking Active TSS	Fetal Lung	lung
20	chr6:33714000-33715200	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr6:33714200-33715200	Enhancers	H9 Cell Line	embryonic stem cell
22	chr6:33714200-33718400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:33714200-33719200	Weak transcription	Pancreas	Pancrea
24	chr6:33714400-33715200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr6:33714400-33718000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:33714600-33715200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:33714600-33715200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:33714600-33716600	Weak transcription	Fetal Thymus	thymus
29	chr6:33714600-33716800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr6:33714800-33715200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:33714800-33715200	Enhancers	Fetal Kidney	kidney
32	chr6:33714800-33715200	Bivalent Enhancer	Fetal Stomach	stomach
33	chr6:33714800-33715200	Flanking Active TSS	Right Ventricle	heart
34	chr6:33714800-33715200	Flanking Active TSS	HSMMtube	muscle
35	chr6:33714800-33715600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:33714800-33715600	Enhancers	Liver	Liver
37	chr6:33714800-33716000	Enhancers	Placenta	Placenta
38	chr6:33714800-33716000	Flanking Active TSS	HSMM	muscle
39	chr6:33714800-33716600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr6:33714800-33717000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr6:33714800-33717000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr6:33714800-33718000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr6:33714800-33718200	Weak transcription	Right Atrium	heart
44	chr6:33714800-33718400	Weak transcription	Esophagus	oesophagus
45	chr6:33714800-33718400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:33714800-33718400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr6:33714800-33718600	Weak transcription	Colonic Mucosa	Colon
48	chr6:33714800-33718800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr6:33714800-33719200	Weak transcription	Lung	lung
50	chr6:33714800-33720600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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