Variant report

Variant	rs7744811
Chromosome Location	chr6:33692368-33692369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33673686..33677249-chr6:33690275..33693823,3	K562	blood:
2	chr6:33692177..33695084-chr6:33755126..33757076,2	MCF-7	breast:
3	chr6:33678200..33682184-chr6:33690933..33696225,5	K562	blood:
4	chr6:33690280..33692789-chr6:33697666..33699553,2	K562	blood:

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction
ENSG00000137288	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs35506178	0.89[EUR][1000 genomes]
rs59957785	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73743304	0.93[EUR][1000 genomes]
rs73743305	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73743310	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73743322	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73743401	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs767894	1.00[CHB][hapmap]
rs9469584	1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469586	1.00[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33680000-33693000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:33680000-33695200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:33680000-33695800	Weak transcription	Spleen	Spleen
4	chr6:33680000-33696200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:33680000-33698400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:33680000-33705000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:33685200-33693400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:33686200-33700200	Weak transcription	Liver	Liver
9	chr6:33686400-33710600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:33686600-33695800	Weak transcription	Right Atrium	heart
11	chr6:33686600-33698600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:33687400-33692600	Enhancers	Stomach Mucosa	stomach
13	chr6:33687400-33694000	Weak transcription	Brain Anterior Caudate	brain
14	chr6:33687800-33693200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:33688800-33698200	Weak transcription	Lung	lung
16	chr6:33688800-33700000	Strong transcription	HSMM	muscle
17	chr6:33689200-33696800	Strong transcription	HSMMtube	muscle
18	chr6:33689400-33695000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:33689600-33694600	Strong transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:33689600-33696600	Enhancers	Fetal Brain Male	brain
21	chr6:33690600-33692600	Enhancers	Fetal Lung	lung
22	chr6:33690600-33694200	Weak transcription	Placenta	Placenta
23	chr6:33690800-33708200	Weak transcription	Gastric	stomach
24	chr6:33691000-33692400	Genic enhancers	Brain Hippocampus Middle	brain
25	chr6:33691000-33693200	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr6:33691200-33692800	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:33691400-33692600	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr6:33691400-33692600	Enhancers	Fetal Stomach	stomach
29	chr6:33691400-33692800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr6:33691400-33693400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
31	chr6:33691400-33694000	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr6:33691600-33692400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:33691600-33692400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:33691600-33692600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr6:33691600-33692800	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr6:33691600-33695600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:33691800-33692600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:33691800-33692600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr6:33691800-33692800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:33691800-33694000	Weak transcription	Pancreas	Pancrea
41	chr6:33691800-33694400	Strong transcription	Left Ventricle	heart
42	chr6:33691800-33711600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:33692000-33692400	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr6:33692000-33692600	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr6:33692000-33692800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:33692000-33692800	Strong transcription	Brain Substantia Nigra	brain
47	chr6:33692000-33693200	Strong transcription	Right Ventricle	heart
48	chr6:33692000-33696800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:33692000-33697000	Weak transcription	Psoas Muscle	Psoas
50	chr6:33692000-33706800	Weak transcription	Fetal Intestine Small	intestine

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