Variant report

Variant	rs73747149
Chromosome Location	chr6:72205518-72205519
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16881389	1.00[AMR][1000 genomes]
rs199628	1.00[AMR][1000 genomes]
rs55901470	1.00[AMR][1000 genomes]
rs56062820	1.00[AMR][1000 genomes]
rs562111	1.00[AMR][1000 genomes]
rs56280910	1.00[AMR][1000 genomes]
rs57603244	1.00[AMR][1000 genomes]
rs58186674	1.00[AMR][1000 genomes]
rs61425931	1.00[AMR][1000 genomes]
rs73747151	1.00[AMR][1000 genomes]
rs73747152	1.00[AMR][1000 genomes]
rs73747154	1.00[AMR][1000 genomes]
rs73747156	1.00[AMR][1000 genomes]
rs73747159	1.00[AMR][1000 genomes]
rs73747160	1.00[AMR][1000 genomes]
rs73747161	1.00[AMR][1000 genomes]
rs73747174	1.00[AMR][1000 genomes]
rs73747175	1.00[AMR][1000 genomes]
rs73747176	1.00[AMR][1000 genomes]
rs73747177	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72192000-72209600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:72199600-72205600	Weak transcription	Aorta	Aorta
3	chr6:72200800-72205600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:72201000-72206400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:72202400-72205600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:72204400-72205800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:72205000-72205600	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:72205000-72205600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:72205000-72205600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:72205200-72205600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:72205200-72205600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:72205200-72205600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:72205200-72205600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:72205200-72205600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:72205200-72205600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr6:72205200-72205600	Enhancers	Fetal Muscle Leg	muscle
17	chr6:72205200-72205600	Enhancers	Fetal Stomach	stomach
18	chr6:72205200-72205600	Enhancers	Rectal Smooth Muscle	rectum
19	chr6:72205200-72205600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:72205200-72205600	Enhancers	GM12878-XiMat	blood
21	chr6:72205200-72205600	Enhancers	HSMMtube	muscle
22	chr6:72205200-72205600	Enhancers	HUVEC	blood vessel
23	chr6:72205200-72205600	Enhancers	Osteobl	bone
24	chr6:72205200-72205800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:72205200-72206200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:72205200-72206200	Flanking Active TSS	Primary B cells from peripheral blood	blood
27	chr6:72205200-72206200	Enhancers	HSMM	muscle
28	chr6:72205400-72205600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:72205400-72205600	Enhancers	Adipose Nuclei	Adipose
30	chr6:72205400-72205600	Enhancers	Fetal Kidney	kidney
31	chr6:72205400-72205600	Flanking Active TSS	NHLF	lung
32	chr6:72205400-72206000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr6:72205400-72206400	Flanking Active TSS	Primary B cells from cord blood	blood
34	chr6:72205400-72206600	Active TSS	Stomach Smooth Muscle	stomach

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