Variant report

Variant	rs73747154
Chromosome Location	chr6:72211096-72211097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16881389	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs199628	1.00[AMR][1000 genomes]
rs55901470	1.00[AMR][1000 genomes]
rs56062820	1.00[AMR][1000 genomes]
rs562111	1.00[AMR][1000 genomes]
rs56280910	1.00[AMR][1000 genomes]
rs57603244	1.00[AMR][1000 genomes]
rs58186674	1.00[AMR][1000 genomes]
rs61425931	1.00[AMR][1000 genomes]
rs73747149	1.00[AMR][1000 genomes]
rs73747151	1.00[AMR][1000 genomes]
rs73747152	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747159	1.00[AMR][1000 genomes]
rs73747160	1.00[AMR][1000 genomes]
rs73747161	1.00[AMR][1000 genomes]
rs73747174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747176	1.00[AMR][1000 genomes]
rs73747177	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72206200-72218600	Weak transcription	Aorta	Aorta
2	chr6:72206600-72212600	Weak transcription	HSMMtube	muscle
3	chr6:72206600-72213400	Weak transcription	NHLF	lung
4	chr6:72206600-72218400	Weak transcription	Fetal Lung	lung
5	chr6:72210000-72212200	Enhancers	Liver	Liver
6	chr6:72210400-72219000	Weak transcription	Fetal Kidney	kidney
7	chr6:72211000-72211800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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