Variant report

Variant	rs73747176
Chromosome Location	chr6:72238590-72238591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16881389	1.00[AMR][1000 genomes]
rs199628	1.00[AMR][1000 genomes]
rs55901470	1.00[AMR][1000 genomes]
rs56062820	1.00[AMR][1000 genomes]
rs562111	1.00[AMR][1000 genomes]
rs56280910	1.00[AMR][1000 genomes]
rs57603244	1.00[AMR][1000 genomes]
rs58186674	1.00[AMR][1000 genomes]
rs61425931	1.00[AMR][1000 genomes]
rs73747149	1.00[AMR][1000 genomes]
rs73747151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747152	1.00[AMR][1000 genomes]
rs73747154	1.00[AMR][1000 genomes]
rs73747156	1.00[AMR][1000 genomes]
rs73747159	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747160	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747161	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73747174	1.00[AMR][1000 genomes]
rs73747175	1.00[AMR][1000 genomes]
rs73747177	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases
2	esv2763575	chr6:72227746-72240130	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72236000-72239400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:72238000-72239600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:72238000-72241800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:72238400-72239600	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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