Variant report

Variant	rs73748608
Chromosome Location	chr5:36364709-36364710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2967076	0.82[AFR][1000 genomes]
rs2967077	0.82[AFR][1000 genomes]
rs56298012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58283682	0.86[AFR][1000 genomes]
rs60650083	0.87[AFR][1000 genomes]
rs73748603	1.00[AMR][1000 genomes]
rs73748619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748620	1.00[AMR][1000 genomes]
rs73748623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748631	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748633	0.87[AFR][1000 genomes]
rs73748660	0.86[AFR][1000 genomes]
rs73748661	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36358400-36365200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:36358400-36367200	Weak transcription	NHDF-Ad	bronchial
3	chr5:36358600-36366600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:36359400-36364800	Weak transcription	Fetal Heart	heart
5	chr5:36360000-36367000	Weak transcription	Fetal Lung	lung
6	chr5:36360000-36373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr5:36361000-36365400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:36361200-36365800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:36363600-36365000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:36363600-36372600	Weak transcription	HSMM	muscle
11	chr5:36363800-36365800	Weak transcription	Hela-S3	cervix
12	chr5:36363800-36367800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:36363800-36372600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:36363800-36373200	Weak transcription	HMEC	breast
15	chr5:36364000-36366600	Weak transcription	NH-A	brain
16	chr5:36364200-36366600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:36364200-36366600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:36364200-36366600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:36364200-36366600	Weak transcription	Osteobl	bone
20	chr5:36364200-36366800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:36364200-36369200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:36364600-36369800	Enhancers	Colon Smooth Muscle	Colon
23	chr5:36364600-36370400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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