Variant report

Variant	rs73748619
Chromosome Location	chr5:36368507-36368508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36367196..36370590-chr5:36371630..36375263,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2967076	0.82[AFR][1000 genomes]
rs2967077	0.82[AFR][1000 genomes]
rs56298012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58283682	0.86[AFR][1000 genomes]
rs60650083	0.87[AFR][1000 genomes]
rs73748603	1.00[AMR][1000 genomes]
rs73748608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748620	1.00[AMR][1000 genomes]
rs73748623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748631	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73748633	0.87[AFR][1000 genomes]
rs73748660	0.86[AFR][1000 genomes]
rs73748661	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36360000-36373400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:36363600-36372600	Weak transcription	HSMM	muscle
3	chr5:36363800-36372600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:36363800-36373200	Weak transcription	HMEC	breast
5	chr5:36364200-36369200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:36364600-36369800	Enhancers	Colon Smooth Muscle	Colon
7	chr5:36364600-36370400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:36365000-36369000	Enhancers	Rectal Smooth Muscle	rectum
9	chr5:36366400-36370200	Enhancers	Hela-S3	cervix
10	chr5:36366600-36369000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:36366600-36369800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:36366600-36370200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:36366800-36368800	Enhancers	Ovary	ovary
14	chr5:36366800-36369600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:36367000-36370000	Enhancers	HepG2	liver
16	chr5:36368000-36369200	Weak transcription	Liver	Liver
17	chr5:36368000-36369200	Weak transcription	Fetal Kidney	kidney
18	chr5:36368200-36373200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr5:36368400-36369400	Weak transcription	Osteobl	bone
20	chr5:36368400-36373400	Weak transcription	NHDF-Ad	bronchial
21	chr5:36368400-36373800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr5:36368400-36373800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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