Variant report

Variant	rs73751611
Chromosome Location	chr6:81062307-81062308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58149782	0.88[AFR][1000 genomes]
rs61475052	0.88[AFR][1000 genomes]
rs61477549	0.84[AFR][1000 genomes]
rs73748764	0.83[AFR][1000 genomes]
rs73748765	0.83[AFR][1000 genomes]
rs73748766	0.83[AFR][1000 genomes]
rs73748768	0.88[AFR][1000 genomes]
rs73748777	0.85[AFR][1000 genomes]
rs73748780	0.88[AFR][1000 genomes]
rs73748786	0.88[AFR][1000 genomes]
rs73748788	0.88[AFR][1000 genomes]
rs73751605	1.00[AFR][1000 genomes]
rs73751616	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv463907	chr6:81047559-81075912	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv604053	chr6:81047559-81075912	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv970303	chr6:81050335-81062570	Enhancers Weak transcription	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81029400-81079600	Weak transcription	HSMM	muscle
2	chr6:81033800-81070200	Weak transcription	Left Ventricle	heart
3	chr6:81048200-81066800	Weak transcription	Pancreas	Pancrea
4	chr6:81048400-81064200	Weak transcription	Liver	Liver
5	chr6:81050400-81071200	Weak transcription	Primary T cells from cord blood	blood
6	chr6:81053600-81073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:81057200-81067200	Weak transcription	Fetal Lung	lung
8	chr6:81057400-81063600	Weak transcription	Fetal Heart	heart
9	chr6:81058400-81067000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:81058400-81071400	Weak transcription	Aorta	Aorta
11	chr6:81058400-81075800	Weak transcription	Psoas Muscle	Psoas
12	chr6:81059200-81069000	Weak transcription	Fetal Stomach	stomach
13	chr6:81060600-81069000	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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