Variant report

Variant	rs73757934
Chromosome Location	chr5:58011720-58011721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55719200	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57083630	1.00[AMR][1000 genomes]
rs57123442	1.00[AMR][1000 genomes]
rs61258317	1.00[AMR][1000 genomes]
rs6450489	1.00[AMR][1000 genomes]
rs6876683	1.00[AMR][1000 genomes]
rs73098311	1.00[AMR][1000 genomes]
rs73098368	1.00[AMR][1000 genomes]
rs73100304	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73100318	1.00[AMR][1000 genomes]
rs73100400	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102351	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73102385	1.00[AMR][1000 genomes]
rs7720795	1.00[AMR][1000 genomes]
rs7729997	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57997800-58012200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:58001800-58013000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:58010400-58012000	Weak transcription	Liver	Liver
4	chr5:58011600-58011800	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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