Variant report
| Variant | rs6876683 |
|---|---|
| Chromosome Location | chr5:57938681-57938682 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:57932028..57933873-chr5:57935161..57938695,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs55719200 | 1.00[AMR][1000 genomes] |
| rs57083630 | 1.00[AMR][1000 genomes] |
| rs57123442 | 1.00[AMR][1000 genomes] |
| rs58414332 | 1.00[AMR][1000 genomes] |
| rs61258317 | 1.00[AMR][1000 genomes] |
| rs6450489 | 1.00[AMR][1000 genomes] |
| rs73098311 | 1.00[AMR][1000 genomes] |
| rs73098368 | 1.00[AMR][1000 genomes] |
| rs73100304 | 1.00[AMR][1000 genomes] |
| rs73100318 | 1.00[AMR][1000 genomes] |
| rs73100400 | 1.00[AMR][1000 genomes] |
| rs73102351 | 1.00[AMR][1000 genomes] |
| rs73102385 | 1.00[AMR][1000 genomes] |
| rs73757811 | 1.00[AMR][1000 genomes] |
| rs73757934 | 1.00[AMR][1000 genomes] |
| rs7720795 | 1.00[AMR][1000 genomes] |
| rs7729997 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2830363 | chr5:57893949-58555491 | Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029145 | chr5:57905821-58141221 | Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv830311 | chr5:57912546-58105636 | Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:57933600-57944000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
