Variant report
| Variant | rs57123442 |
|---|---|
| Chromosome Location | chr5:57827045-57827046 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POU5F1 | chr5:57826739-57827092 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | EP300 | chr5:57826819-57827097 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 3 | ZNF274 | chr5:57826953-57827194 | NT2-D1 | testis: | n/a | n/a |
| 4 | CTCF | chr5:57827029-57827066 | GM13977 | blood: | n/a | n/a |
| 5 | NANOG | chr5:57826832-57827089 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 6 | ZNF274 | chr5:57826894-57827335 | GM08714 | blood: | n/a | n/a |
| 7 | ZNF274 | chr5:57826890-57827339 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 8 | TEAD4 | chr5:57826805-57827129 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 9 | NANOG | chr5:57826783-57827122 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 10 | SRF | chr5:57826939-57827226 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MIR548AE2 | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs55719200 | 1.00[AMR][1000 genomes] |
| rs57083630 | 1.00[AMR][1000 genomes] |
| rs58414332 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61258317 | 1.00[AMR][1000 genomes] |
| rs6876683 | 1.00[AMR][1000 genomes] |
| rs73098311 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73098368 | 1.00[AMR][1000 genomes] |
| rs73100304 | 1.00[AMR][1000 genomes] |
| rs73100318 | 1.00[AMR][1000 genomes] |
| rs73100400 | 1.00[AMR][1000 genomes] |
| rs73102351 | 1.00[AMR][1000 genomes] |
| rs73757811 | 1.00[AMR][1000 genomes] |
| rs73757934 | 1.00[AMR][1000 genomes] |
| rs7720795 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
