Variant report

Variant	rs73761683
Chromosome Location	chr6:106771842-106771843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106755801..106758037-chr6:106770631..106772685,2	MCF-7	breast:
2	chr6:105929729..105932706-chr6:106769743..106771900,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11963681	1.00[ASN][1000 genomes]
rs11963748	1.00[ASN][1000 genomes]
rs17066638	1.00[ASN][1000 genomes]
rs17066720	1.00[ASN][1000 genomes]
rs17066751	1.00[ASN][1000 genomes]
rs17066757	1.00[ASN][1000 genomes]
rs17066765	1.00[ASN][1000 genomes]
rs17066773	1.00[ASN][1000 genomes]
rs2743561	1.00[ASN][1000 genomes]
rs34601838	1.00[ASN][1000 genomes]
rs55690521	1.00[ASN][1000 genomes]
rs55939014	1.00[ASN][1000 genomes]
rs56244906	1.00[ASN][1000 genomes]
rs56654457	1.00[ASN][1000 genomes]
rs57178542	1.00[ASN][1000 genomes]
rs57255548	1.00[ASN][1000 genomes]
rs57433728	1.00[ASN][1000 genomes]
rs57456032	1.00[ASN][1000 genomes]
rs57551512	1.00[ASN][1000 genomes]
rs57559815	1.00[ASN][1000 genomes]
rs57593555	1.00[ASN][1000 genomes]
rs57608855	1.00[ASN][1000 genomes]
rs58046598	1.00[ASN][1000 genomes]
rs58923051	1.00[ASN][1000 genomes]
rs59028211	1.00[ASN][1000 genomes]
rs59725708	1.00[ASN][1000 genomes]
rs60145393	1.00[ASN][1000 genomes]
rs60750215	1.00[ASN][1000 genomes]
rs60779729	1.00[ASN][1000 genomes]
rs61205213	1.00[ASN][1000 genomes]
rs6568430	1.00[ASN][1000 genomes]
rs6929396	1.00[ASN][1000 genomes]
rs73761677	1.00[ASN][1000 genomes]
rs73761678	1.00[ASN][1000 genomes]
rs73761679	1.00[ASN][1000 genomes]
rs73761681	1.00[ASN][1000 genomes]
rs73761684	1.00[ASN][1000 genomes]
rs73774303	1.00[ASN][1000 genomes]
rs73774304	1.00[ASN][1000 genomes]
rs73774305	1.00[ASN][1000 genomes]
rs73775106	1.00[ASN][1000 genomes]
rs73775107	1.00[ASN][1000 genomes]
rs73775389	1.00[ASN][1000 genomes]
rs73775390	1.00[ASN][1000 genomes]
rs73775391	1.00[ASN][1000 genomes]
rs73775392	1.00[ASN][1000 genomes]
rs73775393	1.00[ASN][1000 genomes]
rs73775394	1.00[ASN][1000 genomes]
rs73775395	1.00[ASN][1000 genomes]
rs73775396	1.00[ASN][1000 genomes]
rs73775397	1.00[ASN][1000 genomes]
rs73775398	1.00[ASN][1000 genomes]
rs73775399	1.00[ASN][1000 genomes]
rs73775400	1.00[ASN][1000 genomes]
rs73775402	1.00[ASN][1000 genomes]
rs73775939	1.00[ASN][1000 genomes]
rs73776552	1.00[ASN][1000 genomes]
rs73776553	1.00[ASN][1000 genomes]
rs73776554	1.00[ASN][1000 genomes]
rs73776556	1.00[ASN][1000 genomes]
rs73776558	1.00[ASN][1000 genomes]
rs73776559	1.00[ASN][1000 genomes]
rs73776560	1.00[ASN][1000 genomes]
rs73778103	1.00[ASN][1000 genomes]
rs73778105	1.00[ASN][1000 genomes]
rs73778106	1.00[ASN][1000 genomes]
rs73778107	1.00[ASN][1000 genomes]
rs73778108	1.00[ASN][1000 genomes]
rs73778109	1.00[ASN][1000 genomes]
rs73778110	1.00[ASN][1000 genomes]
rs73778112	1.00[ASN][1000 genomes]
rs73778113	1.00[ASN][1000 genomes]
rs7746126	1.00[ASN][1000 genomes]
rs7769233	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025900	chr6:106529777-106898421	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1018270	chr6:106531658-106908606	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv538399	chr6:106531658-106908606	Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1035110	chr6:106557281-106802212	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv538400	chr6:106557281-106802212	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1022855	chr6:106570926-106802072	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv538401	chr6:106570926-106802072	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
10	nsv1025963	chr6:106593639-106848778	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	nsv1020047	chr6:106597828-106912047	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
12	nsv970664	chr6:106635267-106887670	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
13	nsv1030367	chr6:106667748-106802072	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv538403	chr6:106667748-106802072	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106735200-106773000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:106740000-106773000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:106741000-106772200	Weak transcription	Fetal Lung	lung
4	chr6:106758200-106772000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:106759600-106772000	Weak transcription	NHLF	lung
6	chr6:106761200-106772000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:106762000-106772600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:106763400-106772400	Weak transcription	Aorta	Aorta
9	chr6:106763800-106772200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:106763800-106772600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:106764200-106772000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr6:106764200-106772000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:106764200-106772000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:106764200-106772000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:106764200-106772200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:106764200-106772600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:106764600-106772200	Weak transcription	HSMMtube	muscle
18	chr6:106765000-106772000	Weak transcription	HSMM	muscle
19	chr6:106766200-106772400	Weak transcription	Right Ventricle	heart
20	chr6:106770000-106772400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:106770200-106772000	Weak transcription	NH-A	brain
22	chr6:106770200-106772600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:106770800-106772000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:106770800-106772000	Enhancers	Lung	lung
25	chr6:106771000-106772600	Enhancers	Primary T cells fromperipheralblood	blood
26	chr6:106771200-106772000	Enhancers	Left Ventricle	heart
27	chr6:106771200-106772200	Enhancers	Primary hematopoietic stem cells	blood
28	chr6:106771200-106772200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr6:106771200-106772200	Enhancers	Fetal Thymus	thymus
30	chr6:106771200-106772200	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr6:106771200-106772400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:106771200-106772400	Enhancers	Primary T cells from cord blood	blood
33	chr6:106771200-106772400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr6:106771200-106772400	Enhancers	Fetal Intestine Small	intestine
35	chr6:106771200-106772400	Enhancers	Pancreas	Pancrea
36	chr6:106771200-106772600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr6:106771200-106772600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:106771200-106772600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr6:106771200-106772600	Enhancers	Ovary	ovary
40	chr6:106771200-106772600	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr6:106771200-106774200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:106771400-106772000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr6:106771400-106772000	Enhancers	Primary B cells from cord blood	blood
44	chr6:106771400-106772000	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr6:106771400-106772000	Enhancers	Liver	Liver
46	chr6:106771400-106772000	Enhancers	Gastric	stomach
47	chr6:106771400-106772000	Enhancers	Small Intestine	intestine
48	chr6:106771400-106772000	Enhancers	NHDF-Ad	bronchial
49	chr6:106771400-106772200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr6:106771400-106772200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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