Variant report

Variant	rs73778109
Chromosome Location	chr6:106705523-106705524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106702821..106705726-chr6:106719179..106721244,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11963681	1.00[ASN][1000 genomes]
rs11963748	1.00[ASN][1000 genomes]
rs17066638	1.00[ASN][1000 genomes]
rs17066720	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066751	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066757	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066765	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17066773	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743561	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34601838	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55690521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55939014	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56222587	1.00[AFR][1000 genomes]
rs56244906	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56654457	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57178542	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57255548	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57433728	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57456032	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57551512	1.00[ASN][1000 genomes]
rs57559815	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57593555	1.00[ASN][1000 genomes]
rs57608855	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58046598	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58923051	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59028211	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59725708	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60145393	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60750215	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60779729	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61205213	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6568430	1.00[ASN][1000 genomes]
rs6929396	1.00[ASN][1000 genomes]
rs73761677	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73761678	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73761679	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73761681	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73761683	1.00[ASN][1000 genomes]
rs73761684	1.00[ASN][1000 genomes]
rs73774303	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774304	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73774305	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775106	1.00[ASN][1000 genomes]
rs73775107	1.00[ASN][1000 genomes]
rs73775389	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775390	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775391	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775392	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775393	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775394	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775395	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775396	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775397	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775398	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775399	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775400	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775939	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776552	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776553	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776554	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776556	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776558	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776559	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73776560	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778103	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778105	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778106	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778107	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778110	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778112	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73778113	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746126	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769233	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025900	chr6:106529777-106898421	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1018270	chr6:106531658-106908606	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv538399	chr6:106531658-106908606	Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1035110	chr6:106557281-106802212	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv538400	chr6:106557281-106802212	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv1022855	chr6:106570926-106802072	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv538401	chr6:106570926-106802072	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv1019265	chr6:106587627-106727591	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv538402	chr6:106587627-106727591	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
12	nsv1025963	chr6:106593639-106848778	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
13	nsv1020047	chr6:106597828-106912047	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
14	nsv970664	chr6:106635267-106887670	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	nsv1030367	chr6:106667748-106802072	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv538403	chr6:106667748-106802072	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
17	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106671600-106724400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:106676400-106739200	Weak transcription	Small Intestine	intestine
3	chr6:106677600-106713000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:106683400-106710000	Weak transcription	Fetal Stomach	stomach
5	chr6:106683400-106716600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:106684000-106710600	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:106684000-106710800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:106684000-106720200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:106686600-106710400	Weak transcription	Left Ventricle	heart
10	chr6:106688400-106710400	Weak transcription	Right Ventricle	heart
11	chr6:106689400-106710800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:106689800-106734000	Weak transcription	Esophagus	oesophagus
13	chr6:106690200-106709800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:106690400-106713200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:106691600-106706000	Weak transcription	Ovary	ovary
16	chr6:106694400-106710800	Weak transcription	Spleen	Spleen
17	chr6:106695800-106705600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:106695800-106709200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:106695800-106740800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:106696000-106708800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:106696000-106709800	Weak transcription	Primary T cells from cord blood	blood
22	chr6:106696000-106709800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:106696000-106710600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:106696000-106710800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:106696000-106711000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:106696000-106713200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:106696000-106717000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:106696000-106721400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr6:106696000-106722600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:106696000-106724800	Weak transcription	Placenta	Placenta
31	chr6:106696000-106725600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:106696200-106709800	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr6:106696200-106710400	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr6:106696200-106710800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr6:106696200-106711000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:106696200-106716600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:106696200-106725400	Weak transcription	Dnd41	blood
38	chr6:106696200-106726000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr6:106696600-106706800	Weak transcription	GM12878-XiMat	blood
40	chr6:106696600-106709600	Weak transcription	Primary B cells from peripheral blood	blood
41	chr6:106696600-106709800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr6:106696600-106710400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:106696600-106710400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:106696600-106710800	Weak transcription	Fetal Thymus	thymus
45	chr6:106696600-106711000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr6:106696600-106711000	Weak transcription	Thymus	Thymus
47	chr6:106696600-106725200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:106697800-106709400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:106698200-106720000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:106698800-106710600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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