Variant report

Variant	rs6929396
Chromosome Location	chr6:106591781-106591782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106587956..106591795-chr6:106592518..106598079,7	K562	blood:
2	chr6:106590295..106592947-chr6:106593391..106597445,3	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11963681	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963748	1.00[ASN][1000 genomes]
rs17066638	1.00[ASN][1000 genomes]
rs17066720	1.00[ASN][1000 genomes]
rs17066751	1.00[ASN][1000 genomes]
rs17066757	1.00[ASN][1000 genomes]
rs17066765	1.00[ASN][1000 genomes]
rs17066773	1.00[ASN][1000 genomes]
rs2743561	1.00[ASN][1000 genomes]
rs34601838	1.00[ASN][1000 genomes]
rs55690521	1.00[ASN][1000 genomes]
rs55939014	1.00[ASN][1000 genomes]
rs56244906	1.00[ASN][1000 genomes]
rs56654457	1.00[ASN][1000 genomes]
rs57178542	1.00[ASN][1000 genomes]
rs57255548	1.00[ASN][1000 genomes]
rs57433728	1.00[ASN][1000 genomes]
rs57456032	1.00[ASN][1000 genomes]
rs57551512	1.00[ASN][1000 genomes]
rs57559815	1.00[ASN][1000 genomes]
rs57593555	1.00[ASN][1000 genomes]
rs57608855	1.00[ASN][1000 genomes]
rs58046598	1.00[ASN][1000 genomes]
rs58923051	1.00[ASN][1000 genomes]
rs59028211	1.00[ASN][1000 genomes]
rs59725708	1.00[ASN][1000 genomes]
rs60145393	1.00[ASN][1000 genomes]
rs60750215	1.00[ASN][1000 genomes]
rs60779729	1.00[ASN][1000 genomes]
rs61205213	1.00[ASN][1000 genomes]
rs6568430	1.00[ASN][1000 genomes]
rs73761677	1.00[ASN][1000 genomes]
rs73761678	1.00[ASN][1000 genomes]
rs73761679	1.00[ASN][1000 genomes]
rs73761681	1.00[ASN][1000 genomes]
rs73761683	1.00[ASN][1000 genomes]
rs73761684	1.00[ASN][1000 genomes]
rs73774303	1.00[ASN][1000 genomes]
rs73774304	1.00[ASN][1000 genomes]
rs73774305	1.00[ASN][1000 genomes]
rs73775106	1.00[ASN][1000 genomes]
rs73775107	1.00[ASN][1000 genomes]
rs73775389	1.00[ASN][1000 genomes]
rs73775390	1.00[ASN][1000 genomes]
rs73775391	1.00[ASN][1000 genomes]
rs73775392	1.00[ASN][1000 genomes]
rs73775393	1.00[ASN][1000 genomes]
rs73775394	1.00[ASN][1000 genomes]
rs73775395	1.00[ASN][1000 genomes]
rs73775396	1.00[ASN][1000 genomes]
rs73775397	1.00[ASN][1000 genomes]
rs73775398	1.00[ASN][1000 genomes]
rs73775399	1.00[ASN][1000 genomes]
rs73775400	1.00[ASN][1000 genomes]
rs73775402	1.00[ASN][1000 genomes]
rs73775939	1.00[ASN][1000 genomes]
rs73776552	1.00[ASN][1000 genomes]
rs73776553	1.00[ASN][1000 genomes]
rs73776554	1.00[ASN][1000 genomes]
rs73776556	1.00[ASN][1000 genomes]
rs73776558	1.00[ASN][1000 genomes]
rs73776559	1.00[ASN][1000 genomes]
rs73776560	1.00[ASN][1000 genomes]
rs73778103	1.00[ASN][1000 genomes]
rs73778105	1.00[ASN][1000 genomes]
rs73778106	1.00[ASN][1000 genomes]
rs73778107	1.00[ASN][1000 genomes]
rs73778108	1.00[ASN][1000 genomes]
rs73778109	1.00[ASN][1000 genomes]
rs73778110	1.00[ASN][1000 genomes]
rs73778112	1.00[ASN][1000 genomes]
rs73778113	1.00[ASN][1000 genomes]
rs7746126	1.00[ASN][1000 genomes]
rs7769233	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1025231	chr6:106451012-106634389	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv830755	chr6:106461705-106624202	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1025900	chr6:106529777-106898421	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1018270	chr6:106531658-106908606	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv538399	chr6:106531658-106908606	Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	esv1832544	chr6:106539914-106642993	Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1035110	chr6:106557281-106802212	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv538400	chr6:106557281-106802212	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv1022855	chr6:106570926-106802072	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	nsv538401	chr6:106570926-106802072	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv1019265	chr6:106587627-106727591	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv538402	chr6:106587627-106727591	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106583200-106593600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:106584400-106593600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:106588600-106592000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:106588600-106594000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:106588600-106594200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:106588800-106592000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr6:106589200-106592200	Enhancers	Primary T cells from cord blood	blood
8	chr6:106589200-106592200	Enhancers	Fetal Thymus	thymus
9	chr6:106589400-106593600	Weak transcription	HMEC	breast
10	chr6:106589600-106593000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:106590200-106592800	Weak transcription	Thymus	Thymus
12	chr6:106590200-106593600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:106590400-106591800	Enhancers	Placenta	Placenta
14	chr6:106590400-106592000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:106590400-106592800	Weak transcription	Fetal Heart	heart
16	chr6:106590600-106592000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:106590600-106592800	Weak transcription	K562	blood
18	chr6:106590600-106593000	Enhancers	GM12878-XiMat	blood
19	chr6:106590600-106593200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:106590600-106593400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:106590600-106593400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:106590600-106593400	Weak transcription	NHEK	skin
23	chr6:106590800-106592800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:106590800-106593200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:106590800-106593600	Weak transcription	NHDF-Ad	bronchial
26	chr6:106590800-106594800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:106591000-106592800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:106591000-106594200	Weak transcription	HSMMtube	muscle
29	chr6:106591000-106594800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:106591200-106592800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:106591200-106592800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:106591200-106592800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:106591200-106593000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:106591200-106593200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:106591200-106594800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:106591400-106592600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr6:106591400-106593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:106591600-106591800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:106591600-106592800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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