Variant report

Variant	rs73763042
Chromosome Location	chr6:110672900-110672901
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110671256..110674188-chr6:110679968..110681627,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17071490	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59351920	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924534	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937074	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763041	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763046	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773179	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773202	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv604516	chr6:110669514-110707820	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110662000-110674400	Enhancers	Colon Smooth Muscle	Colon
2	chr6:110665200-110673200	Weak transcription	Aorta	Aorta
3	chr6:110670200-110673800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:110670600-110674200	Weak transcription	Fetal Brain Female	brain
5	chr6:110670600-110678200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:110670800-110676400	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:110670800-110676400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:110670800-110678000	Weak transcription	Lung	lung
9	chr6:110670800-110678600	Weak transcription	Brain Substantia Nigra	brain
10	chr6:110671000-110673400	Weak transcription	Fetal Brain Male	brain
11	chr6:110671200-110673200	Weak transcription	Brain Anterior Caudate	brain
12	chr6:110671200-110674000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:110671200-110676400	Weak transcription	Pancreas	Pancrea
14	chr6:110672400-110676400	Enhancers	Rectal Smooth Muscle	rectum
15	chr6:110672400-110677200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:110672600-110673400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr6:110672600-110673600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:110672600-110674000	Enhancers	Fetal Kidney	kidney
19	chr6:110672600-110674600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:110672600-110674600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:110672600-110674800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:110672600-110675200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr6:110672600-110675200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:110672600-110677000	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:110672600-110677800	Enhancers	Fetal Stomach	stomach
26	chr6:110672600-110678000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:110672800-110673000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:110672800-110673000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:110672800-110673000	Enhancers	Fetal Intestine Large	intestine
30	chr6:110672800-110673400	Enhancers	Ovary	ovary
31	chr6:110672800-110673600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:110672800-110674000	Enhancers	Small Intestine	intestine
33	chr6:110672800-110674000	Enhancers	Stomach Smooth Muscle	stomach
34	chr6:110672800-110675600	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:110672800-110676600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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