Variant report

Variant	rs73763045
Chromosome Location	chr6:110678302-110678303
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17071490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59351920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924534	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv604516	chr6:110669514-110707820	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110670800-110678600	Weak transcription	Brain Substantia Nigra	brain
2	chr6:110674600-110678600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:110675000-110678400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:110675600-110678400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:110676200-110680200	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr6:110676400-110678600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:110677000-110678600	Weak transcription	Spleen	Spleen
8	chr6:110677200-110678400	Weak transcription	Aorta	Aorta
9	chr6:110677200-110678600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr6:110677200-110678600	Weak transcription	Ovary	ovary
11	chr6:110677200-110680200	Weak transcription	HepG2	liver
12	chr6:110677200-110680800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:110677800-110678400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr6:110677800-110678400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:110677800-110678600	Enhancers	Placenta	Placenta
16	chr6:110677800-110678600	Enhancers	Pancreas	Pancrea
17	chr6:110677800-110678600	Bivalent Enhancer	Thymus	Thymus
18	chr6:110677800-110678800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:110677800-110678800	Flanking Active TSS	Fetal Kidney	kidney
20	chr6:110677800-110679000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:110677800-110680000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr6:110678000-110678400	Bivalent Enhancer	Primary T cells from cord blood	blood
23	chr6:110678000-110678400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
24	chr6:110678000-110678400	Bivalent Enhancer	Brain Hippocampus Middle	brain
25	chr6:110678000-110678600	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:110678000-110678600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:110678000-110678600	Enhancers	Fetal Brain Female	brain
28	chr6:110678000-110678600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr6:110678000-110678600	Enhancers	Right Atrium	heart
30	chr6:110678000-110678800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
31	chr6:110678000-110678800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
32	chr6:110678000-110678800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
33	chr6:110678000-110678800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
34	chr6:110678000-110678800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:110678000-110678800	Enhancers	Lung	lung
36	chr6:110678000-110678800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
37	chr6:110678000-110679600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
38	chr6:110678000-110679800	Active TSS	Colon Smooth Muscle	Colon
39	chr6:110678200-110678400	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr6:110678200-110678400	Enhancers	Fetal Brain Male	brain
41	chr6:110678200-110678400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
42	chr6:110678200-110678400	Active TSS	Rectal Smooth Muscle	rectum
43	chr6:110678200-110678600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
44	chr6:110678200-110678600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
45	chr6:110678200-110678600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
46	chr6:110678200-110678600	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr6:110678200-110678600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:110678200-110678600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:110678200-110678600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
50	chr6:110678200-110678600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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