Variant report

Variant	rs73763046
Chromosome Location	chr6:110678908-110678909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DDO-2	chr6:110678539-110679180	NONHSAT114418

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17071490	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59351920	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6924534	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937074	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763041	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763042	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73763045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752796	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773179	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7773202	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv604516	chr6:110669514-110707820	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110676200-110680200	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr6:110677200-110680200	Weak transcription	HepG2	liver
3	chr6:110677200-110680800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:110677800-110679000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:110677800-110680000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:110678000-110679600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
7	chr6:110678000-110679800	Active TSS	Colon Smooth Muscle	Colon
8	chr6:110678200-110679000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
9	chr6:110678200-110679200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:110678200-110679600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr6:110678200-110679800	Bivalent/Poised TSS	NHDF-Ad	bronchial
12	chr6:110678200-110680000	Active TSS	Brain Angular Gyrus	brain
13	chr6:110678200-110680200	Active TSS	Stomach Smooth Muscle	stomach
14	chr6:110678400-110679000	Bivalent Enhancer	Stomach Mucosa	stomach
15	chr6:110678400-110679600	Active TSS	Brain Anterior Caudate	brain
16	chr6:110678400-110679800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
17	chr6:110678400-110679800	Bivalent/Poised TSS	Osteobl	bone
18	chr6:110678400-110680000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:110678400-110680000	Active TSS	Aorta	Aorta
20	chr6:110678400-110680000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
21	chr6:110678400-110680400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
22	chr6:110678600-110679000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
23	chr6:110678600-110679000	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:110678600-110679000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
25	chr6:110678600-110679000	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
26	chr6:110678600-110679000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
27	chr6:110678600-110679000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr6:110678600-110679000	Flanking Active TSS	Liver	Liver
29	chr6:110678600-110679000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
30	chr6:110678600-110679000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
31	chr6:110678600-110679000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:110678600-110679000	Flanking Active TSS	Esophagus	oesophagus
33	chr6:110678600-110679000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
34	chr6:110678600-110679000	Flanking Active TSS	Fetal Brain Female	brain
35	chr6:110678600-110679000	Flanking Active TSS	Gastric	stomach
36	chr6:110678600-110679000	Flanking Active TSS	Pancreas	Pancrea
37	chr6:110678600-110679000	Flanking Active TSS	Right Ventricle	heart
38	chr6:110678600-110679000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
39	chr6:110678600-110679200	Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr6:110678600-110679200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:110678600-110679200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:110678600-110679200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:110678600-110679200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:110678600-110679200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:110678600-110679200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
46	chr6:110678600-110679200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
47	chr6:110678600-110679200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
48	chr6:110678600-110679200	Flanking Active TSS	Placenta	Placenta
49	chr6:110678600-110679200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
50	chr6:110678600-110679400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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