Variant report

Variant	rs73766521
Chromosome Location	chr6:118817468-118817469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs17080221	0.96[AFR][1000 genomes]
rs2883871	0.87[AFR][1000 genomes]
rs57182451	0.91[AFR][1000 genomes]
rs57622287	0.81[AFR][1000 genomes]
rs58157400	0.83[AFR][1000 genomes]
rs59685154	0.94[AFR][1000 genomes]
rs73766507	0.91[AFR][1000 genomes]
rs73766508	0.85[AFR][1000 genomes]
rs73766509	0.91[AFR][1000 genomes]
rs73766511	0.91[AFR][1000 genomes]
rs73766513	0.89[AFR][1000 genomes]
rs73766519	0.85[AFR][1000 genomes]
rs73766520	0.85[AFR][1000 genomes]
rs73766522	1.00[AFR][1000 genomes]
rs73766526	0.91[AFR][1000 genomes]
rs73766532	0.91[AFR][1000 genomes]
rs73766536	0.83[AFR][1000 genomes]
rs73766541	0.83[AFR][1000 genomes]
rs73766547	0.81[AFR][1000 genomes]
rs73766558	0.85[AFR][1000 genomes]
rs73766562	0.87[AFR][1000 genomes]
rs73766563	0.87[AFR][1000 genomes]
rs73766571	0.83[AFR][1000 genomes]
rs73766572	0.83[AFR][1000 genomes]
rs73766576	0.89[AFR][1000 genomes]
rs73768672	0.85[AFR][1000 genomes]
rs73768674	0.85[AFR][1000 genomes]
rs73768687	0.96[AFR][1000 genomes]
rs73768688	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv604555	chr6:118695049-118856822	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv1020586	chr6:118711098-118900012	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
13	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
16	nsv432960	chr6:118723307-118826307	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
17	nsv525179	chr6:118726243-118876092	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
18	nsv1019357	chr6:118731468-118860705	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
19	nsv464027	chr6:118768150-118856822	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
20	nsv604557	chr6:118768150-118856822	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
21	nsv464029	chr6:118768150-118861263	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
22	nsv604558	chr6:118768150-118861263	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
23	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
24	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
25	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
26	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
27	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
28	nsv525925	chr6:118813320-118819212	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118784600-118827600	Weak transcription	Esophagus	oesophagus
2	chr6:118791000-118846000	Weak transcription	Gastric	stomach
3	chr6:118807400-118842600	Weak transcription	NHLF	lung
4	chr6:118809200-118822200	Weak transcription	Right Ventricle	heart
5	chr6:118809200-118822400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:118809200-118825200	Weak transcription	Lung	lung
7	chr6:118810000-118845800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:118810200-118821800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:118810400-118819000	Strong transcription	Fetal Thymus	thymus
10	chr6:118810400-118821200	Weak transcription	Fetal Stomach	stomach
11	chr6:118810800-118825200	Weak transcription	HSMMtube	muscle
12	chr6:118810800-118825400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:118810800-118827400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:118810800-118827400	Weak transcription	Small Intestine	intestine
15	chr6:118810800-118827600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:118810800-118827800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:118811000-118821800	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:118811000-118828000	Weak transcription	Spleen	Spleen
19	chr6:118811200-118821600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:118811400-118821200	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:118811400-118821800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:118811400-118825800	Weak transcription	Ovary	ovary
23	chr6:118811400-118835800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:118811600-118818400	Strong transcription	Primary B cells from cord blood	blood
25	chr6:118811600-118821400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:118811800-118817600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:118811800-118818400	Weak transcription	Psoas Muscle	Psoas
28	chr6:118811800-118821600	Weak transcription	Fetal Brain Female	brain
29	chr6:118811800-118823600	Weak transcription	K562	blood
30	chr6:118811800-118828600	Weak transcription	GM12878-XiMat	blood
31	chr6:118812000-118823400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:118812400-118845800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:118813000-118822200	Weak transcription	Placenta	Placenta
34	chr6:118813200-118834400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:118813200-118842800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr6:118814000-118820400	Weak transcription	NHDF-Ad	bronchial
37	chr6:118814000-118833400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:118814600-118822200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:118814600-118833200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:118814600-118844400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:118814600-118846200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:118815200-118826800	Strong transcription	Primary T cells from cord blood	blood
43	chr6:118815400-118819600	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr6:118815800-118817600	Strong transcription	Thymus	Thymus
45	chr6:118815800-118818200	Strong transcription	Primary B cells from peripheral blood	blood
46	chr6:118815800-118818200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:118815800-118821400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:118815800-118831400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:118816000-118833200	Weak transcription	Aorta	Aorta
50	chr6:118816000-118843400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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