Variant report

Variant	rs73766541
Chromosome Location	chr6:118857965-118857966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs17080186	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17080221	1.00[AMR][1000 genomes]
rs2883871	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55761377	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55968023	1.00[AMR][1000 genomes]
rs56007878	1.00[AMR][1000 genomes]
rs56057396	1.00[AMR][1000 genomes]
rs56242764	1.00[AMR][1000 genomes]
rs56259947	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56348705	1.00[AMR][1000 genomes]
rs57161631	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57182451	0.92[AFR][1000 genomes]
rs57622287	1.00[AMR][1000 genomes]
rs58070035	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58157400	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58510356	1.00[AMR][1000 genomes]
rs59685154	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59715007	1.00[AMR][1000 genomes]
rs60606021	1.00[AMR][1000 genomes]
rs60630459	1.00[AMR][1000 genomes]
rs6912700	1.00[AMR][1000 genomes]
rs73766505	1.00[AMR][1000 genomes]
rs73766506	1.00[AMR][1000 genomes]
rs73766507	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766508	1.00[AMR][1000 genomes]
rs73766509	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766511	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766513	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766521	0.83[AFR][1000 genomes]
rs73766522	0.83[AFR][1000 genomes]
rs73766526	0.92[AFR][1000 genomes]
rs73766532	0.92[AFR][1000 genomes]
rs73766536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766547	1.00[AMR][1000 genomes]
rs73766558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766561	1.00[AMR][1000 genomes]
rs73766562	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766563	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766564	1.00[AMR][1000 genomes]
rs73766571	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766572	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766575	1.00[AMR][1000 genomes]
rs73766576	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766579	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766582	1.00[AMR][1000 genomes]
rs73766587	1.00[AMR][1000 genomes]
rs73766588	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766589	1.00[AMR][1000 genomes]
rs73766591	1.00[AMR][1000 genomes]
rs73766593	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766602	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768507	0.83[AFR][1000 genomes]
rs73768508	1.00[AMR][1000 genomes]
rs73768523	1.00[AMR][1000 genomes]
rs73768526	1.00[AMR][1000 genomes]
rs73768532	1.00[AMR][1000 genomes]
rs73768534	1.00[AMR][1000 genomes]
rs73768543	1.00[AMR][1000 genomes]
rs73768544	1.00[AMR][1000 genomes]
rs73768545	1.00[AMR][1000 genomes]
rs73768546	1.00[AMR][1000 genomes]
rs73768547	1.00[AMR][1000 genomes]
rs73768654	1.00[AMR][1000 genomes]
rs73768655	1.00[AMR][1000 genomes]
rs73768656	1.00[AMR][1000 genomes]
rs73768663	1.00[AMR][1000 genomes]
rs73768664	1.00[AMR][1000 genomes]
rs73768668	1.00[AMR][1000 genomes]
rs73768669	1.00[AMR][1000 genomes]
rs73768672	1.00[AMR][1000 genomes]
rs73768674	1.00[AMR][1000 genomes]
rs73768687	1.00[AMR][1000 genomes]
rs73768688	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv1020586	chr6:118711098-118900012	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
12	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv525179	chr6:118726243-118876092	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
16	nsv1019357	chr6:118731468-118860705	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
17	nsv464029	chr6:118768150-118861263	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
18	nsv604558	chr6:118768150-118861263	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
19	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
20	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
21	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
22	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
23	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118824200-118858800	Weak transcription	NH-A	brain
2	chr6:118824200-118869800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:118836600-118869400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:118842600-118863800	Weak transcription	NHDF-Ad	bronchial
5	chr6:118844000-118858000	Weak transcription	Fetal Stomach	stomach
6	chr6:118844800-118858000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:118844800-118859400	Weak transcription	Dnd41	blood
8	chr6:118844800-118872000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:118844800-118875800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:118845000-118863400	Weak transcription	HSMM	muscle
11	chr6:118845200-118880000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:118846000-118875600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:118846200-118858400	Weak transcription	Fetal Thymus	thymus
14	chr6:118846200-118858600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:118846200-118878600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:118847800-118862400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:118847800-118895400	Weak transcription	Pancreas	Pancrea
18	chr6:118848600-118858600	Weak transcription	Psoas Muscle	Psoas
19	chr6:118848600-118858800	Weak transcription	Ovary	ovary
20	chr6:118848600-118863600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:118850000-118864000	Weak transcription	Stomach Mucosa	stomach
22	chr6:118850400-118858400	Weak transcription	Fetal Lung	lung
23	chr6:118851000-118867400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:118851600-118858800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:118851600-118863400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:118852600-118895200	Weak transcription	Primary B cells from cord blood	blood
27	chr6:118853600-118862200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:118853600-118863800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:118854000-118858600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:118854800-118863800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:118856400-118859400	Enhancers	Fetal Heart	heart
32	chr6:118856800-118865000	Weak transcription	Primary T cells from cord blood	blood
33	chr6:118857400-118858000	Enhancers	Brain Angular Gyrus	brain
34	chr6:118857400-118858600	Enhancers	K562	blood
35	chr6:118857400-118858800	Active TSS	Right Ventricle	heart
36	chr6:118857400-118859000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:118857400-118859000	Enhancers	Brain Substantia Nigra	brain
38	chr6:118857400-118859000	Active TSS	Right Atrium	heart
39	chr6:118857400-118859400	Enhancers	Brain Hippocampus Middle	brain
40	chr6:118857600-118858000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:118857600-118858000	Enhancers	Brain Cingulate Gyrus	brain
42	chr6:118857800-118858000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr6:118857800-118858000	Flanking Active TSS	Left Ventricle	heart
44	chr6:118857800-118858000	Enhancers	Small Intestine	intestine
45	chr6:118857800-118858000	Enhancers	Spleen	Spleen
46	chr6:118857800-118859000	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr6:118857800-118859200	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr6:118857800-118859400	Enhancers	Colon Smooth Muscle	Colon
49	chr6:118857800-118859400	Enhancers	Rectal Smooth Muscle	rectum
50	chr6:118857800-118869400	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links