Variant report

Variant	rs55761377
Chromosome Location	chr6:118941804-118941805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs17080186	1.00[AMR][1000 genomes]
rs17080221	1.00[AMR][1000 genomes]
rs2883871	1.00[AMR][1000 genomes]
rs55968023	1.00[AMR][1000 genomes]
rs56007878	1.00[AMR][1000 genomes]
rs56057396	1.00[AMR][1000 genomes]
rs56242764	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56259947	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56348705	1.00[AMR][1000 genomes]
rs57161631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57182451	0.83[AFR][1000 genomes]
rs57622287	1.00[AMR][1000 genomes]
rs58070035	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58157400	1.00[AMR][1000 genomes]
rs58510356	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59685154	1.00[AMR][1000 genomes]
rs59715007	1.00[AMR][1000 genomes]
rs60606021	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60630459	1.00[AMR][1000 genomes]
rs73766505	1.00[AMR][1000 genomes]
rs73766506	1.00[AMR][1000 genomes]
rs73766507	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766508	1.00[AMR][1000 genomes]
rs73766509	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766511	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766513	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766526	0.83[AFR][1000 genomes]
rs73766532	0.83[AFR][1000 genomes]
rs73766536	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766541	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766547	1.00[AMR][1000 genomes]
rs73766558	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766561	1.00[AMR][1000 genomes]
rs73766562	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766563	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766564	1.00[AMR][1000 genomes]
rs73766571	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766572	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766575	1.00[AMR][1000 genomes]
rs73766576	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766579	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766582	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766587	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766589	1.00[AMR][1000 genomes]
rs73766591	1.00[AMR][1000 genomes]
rs73766593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768507	1.00[AFR][1000 genomes]
rs73768508	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768523	1.00[AMR][1000 genomes]
rs73768526	1.00[AMR][1000 genomes]
rs73768532	1.00[AMR][1000 genomes]
rs73768534	1.00[AMR][1000 genomes]
rs73768543	1.00[AMR][1000 genomes]
rs73768544	1.00[AMR][1000 genomes]
rs73768545	1.00[AMR][1000 genomes]
rs73768546	1.00[AMR][1000 genomes]
rs73768547	1.00[AMR][1000 genomes]
rs73768548	1.00[AMR][1000 genomes]
rs73768674	1.00[AMR][1000 genomes]
rs73768687	1.00[AMR][1000 genomes]
rs73768688	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
17	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
18	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
19	nsv1030331	chr6:118874345-118975680	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	esv3451317	chr6:118938758-118947624	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118912200-118966200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:118920800-118951200	Weak transcription	HSMM	muscle
3	chr6:118925000-118945000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:118926600-118947000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:118927000-118965000	Weak transcription	NHLF	lung
6	chr6:118928000-118952000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:118928800-118951800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:118928800-118951800	Weak transcription	Spleen	Spleen
9	chr6:118929200-118947000	Weak transcription	Thymus	Thymus
10	chr6:118931600-118970400	Weak transcription	NH-A	brain
11	chr6:118932800-118943000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:118933600-118946800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:118935600-118951400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:118937000-118947000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:118937200-118946200	Weak transcription	Dnd41	blood
16	chr6:118937800-118947000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:118938800-118944600	Weak transcription	Fetal Lung	lung
18	chr6:118939000-118944200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr6:118939200-118943400	Weak transcription	Right Ventricle	heart
20	chr6:118939200-118946000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:118939200-118946400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:118939400-118942400	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:118939400-118942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:118939600-118943600	Weak transcription	Primary T cells from cord blood	blood
25	chr6:118939800-118942600	Enhancers	Pancreas	Pancrea
26	chr6:118940000-118942600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:118940000-118942800	Weak transcription	Fetal Thymus	thymus
28	chr6:118940200-118947000	Weak transcription	K562	blood
29	chr6:118940200-118966400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:118940400-118942400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr6:118940400-118943400	Weak transcription	Osteobl	bone
32	chr6:118940400-118943600	Weak transcription	Gastric	stomach
33	chr6:118940400-118945000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:118940400-118945600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:118940400-118946200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:118940400-118946800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr6:118940400-118947200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:118940400-118947800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:118940400-118947800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:118940400-118950200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:118940400-118951800	Weak transcription	HMEC	breast
42	chr6:118940400-118960600	Weak transcription	Colon Smooth Muscle	Colon
43	chr6:118940600-118945000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:118940600-118946800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr6:118940600-118948600	Weak transcription	Brain Anterior Caudate	brain
46	chr6:118940600-118951400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:118940600-118955200	Weak transcription	Brain Substantia Nigra	brain
48	chr6:118940800-118942600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr6:118940800-118942600	Weak transcription	Right Atrium	heart
50	chr6:118940800-118943600	Weak transcription	Ovary	ovary

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