The 2.0 version of rSNPBase

Variant report

Variant rs57622287
Chromosome Location chr6:118868296-118868297
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:118824200-118869800 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr6:118836600-118869400 Weak transcription Primary T killer memory cells from peripheral blood blood
3 chr6:118844800-118872000 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr6:118844800-118875800 Weak transcription Primary T cells fromperipheralblood blood
5 chr6:118845200-118880000 Weak transcription Primary monocytes fromperipheralblood blood
6 chr6:118846000-118875600 Weak transcription Monocytes-CD14+_RO01746 blood
7 chr6:118846200-118878600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
8 chr6:118847800-118895400 Weak transcription Pancreas Pancrea
9 chr6:118852600-118895200 Weak transcription Primary B cells from cord blood blood
10 chr6:118857800-118869400 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr6:118858000-118871000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr6:118859000-118869000 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr6:118859400-118880200 Weak transcription Brain Hippocampus Middle brain
14 chr6:118862400-118871800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
15 chr6:118863000-118868400 Weak transcription Skeletal Muscle Female skeletal muscle
16 chr6:118864200-118871600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr6:118864400-118871600 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr6:118864400-118872200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr6:118864400-118872600 Weak transcription HMEC breast
20 chr6:118864400-118895200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr6:118865400-118872200 Weak transcription Osteobl bone
22 chr6:118865600-118869400 Weak transcription NH-A brain
23 chr6:118866400-118869200 Weak transcription Primary T cells from cord blood blood
24 chr6:118866400-118869200 Weak transcription Primary T helper cells PMA-I stimulated --
25 chr6:118866800-118869400 Active TSS Fetal Heart heart
26 chr6:118867000-118868400 Enhancers Stomach Mucosa stomach
27 chr6:118867000-118868600 Enhancers Pancreatic Islets Pancreatic Islet
28 chr6:118867000-118878800 Active TSS Right Atrium heart
29 chr6:118867200-118868400 Enhancers Colon Smooth Muscle Colon
30 chr6:118867400-118868600 Active TSS Right Ventricle heart
31 chr6:118867400-118868600 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr6:118867800-118868600 Enhancers Fetal Lung lung
33 chr6:118867800-118872000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr6:118867800-118872000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
35 chr6:118867800-118875200 Active TSS Aorta Aorta
36 chr6:118867800-118877200 Active TSS Stomach Smooth Muscle stomach
37 chr6:118868000-118868600 Enhancers HUES48 Cell Line embryonic stem cell
38 chr6:118868000-118868600 Enhancers HSMM muscle
39 chr6:118868000-118869200 Weak transcription Rectal Smooth Muscle rectum
40 chr6:118868200-118868400 Weak transcription Fetal Stomach stomach
41 chr6:118868200-118871800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr6:118868200-118872200 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015