Variant report

Variant	rs73768654
Chromosome Location	chr6:118699626-118699627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17080186	1.00[AMR][1000 genomes]
rs17080221	1.00[AMR][1000 genomes]
rs2883871	1.00[AMR][1000 genomes]
rs55968023	1.00[AMR][1000 genomes]
rs56007878	1.00[AMR][1000 genomes]
rs56348705	1.00[AMR][1000 genomes]
rs57622287	1.00[AMR][1000 genomes]
rs58157400	1.00[AMR][1000 genomes]
rs59685154	1.00[AMR][1000 genomes]
rs59715007	1.00[AMR][1000 genomes]
rs6912700	1.00[AMR][1000 genomes]
rs73766505	1.00[AMR][1000 genomes]
rs73766506	1.00[AMR][1000 genomes]
rs73766507	1.00[AMR][1000 genomes]
rs73766508	1.00[AMR][1000 genomes]
rs73766509	1.00[AMR][1000 genomes]
rs73766511	1.00[AMR][1000 genomes]
rs73766513	1.00[AMR][1000 genomes]
rs73766536	1.00[AMR][1000 genomes]
rs73766541	1.00[AMR][1000 genomes]
rs73766547	1.00[AMR][1000 genomes]
rs73766558	1.00[AMR][1000 genomes]
rs73766561	1.00[AMR][1000 genomes]
rs73766562	1.00[AMR][1000 genomes]
rs73766563	1.00[AMR][1000 genomes]
rs73766564	1.00[AMR][1000 genomes]
rs73768655	1.00[AMR][1000 genomes]
rs73768656	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768663	1.00[AMR][1000 genomes]
rs73768664	1.00[AMR][1000 genomes]
rs73768668	1.00[AMR][1000 genomes]
rs73768669	1.00[AMR][1000 genomes]
rs73768672	1.00[AMR][1000 genomes]
rs73768674	1.00[AMR][1000 genomes]
rs73768687	1.00[AMR][1000 genomes]
rs73768688	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv604554	chr6:118631282-118716318	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830787	chr6:118631902-118805106	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
11	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv604555	chr6:118695049-118856822	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118688200-118700200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:118691400-118700400	Enhancers	Fetal Heart	heart
3	chr6:118698200-118699800	Enhancers	Thymus	Thymus
4	chr6:118698800-118699800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:118698800-118700400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:118699000-118699800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:118699000-118699800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:118699000-118700000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:118699400-118699800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:118699600-118700400	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr6:118699600-118707600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr6:118699600-118716400	Weak transcription	Psoas Muscle	Psoas

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