Variant report

Variant	rs56057396
Chromosome Location	chr6:118911371-118911372
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs17080186	1.00[AMR][1000 genomes]
rs17080221	1.00[AMR][1000 genomes]
rs2883871	1.00[AMR][1000 genomes]
rs55761377	1.00[AMR][1000 genomes]
rs55968023	1.00[AMR][1000 genomes]
rs56007878	1.00[AMR][1000 genomes]
rs56242764	1.00[AMR][1000 genomes]
rs56259947	1.00[AMR][1000 genomes]
rs56348705	1.00[AMR][1000 genomes]
rs57161631	1.00[AMR][1000 genomes]
rs57622287	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58070035	1.00[AMR][1000 genomes]
rs58157400	1.00[AMR][1000 genomes]
rs58510356	1.00[AMR][1000 genomes]
rs59685154	1.00[AMR][1000 genomes]
rs59715007	1.00[AMR][1000 genomes]
rs60606021	1.00[AMR][1000 genomes]
rs60630459	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6912700	1.00[AMR][1000 genomes]
rs73766505	1.00[AMR][1000 genomes]
rs73766506	1.00[AMR][1000 genomes]
rs73766507	1.00[AMR][1000 genomes]
rs73766508	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766509	1.00[AMR][1000 genomes]
rs73766511	1.00[AMR][1000 genomes]
rs73766513	1.00[AMR][1000 genomes]
rs73766519	0.85[AFR][1000 genomes]
rs73766520	0.85[AFR][1000 genomes]
rs73766536	1.00[AMR][1000 genomes]
rs73766541	1.00[AMR][1000 genomes]
rs73766547	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766558	1.00[AMR][1000 genomes]
rs73766561	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766562	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766563	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766571	1.00[AMR][1000 genomes]
rs73766572	1.00[AMR][1000 genomes]
rs73766575	1.00[AMR][1000 genomes]
rs73766576	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766579	1.00[AMR][1000 genomes]
rs73766582	1.00[AMR][1000 genomes]
rs73766587	1.00[AMR][1000 genomes]
rs73766588	1.00[AMR][1000 genomes]
rs73766589	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766591	1.00[AMR][1000 genomes]
rs73766593	1.00[AMR][1000 genomes]
rs73766602	1.00[AMR][1000 genomes]
rs73768508	1.00[AMR][1000 genomes]
rs73768523	1.00[AMR][1000 genomes]
rs73768526	1.00[AMR][1000 genomes]
rs73768532	1.00[AMR][1000 genomes]
rs73768534	1.00[AMR][1000 genomes]
rs73768543	1.00[AMR][1000 genomes]
rs73768544	1.00[AMR][1000 genomes]
rs73768545	1.00[AMR][1000 genomes]
rs73768546	1.00[AMR][1000 genomes]
rs73768547	1.00[AMR][1000 genomes]
rs73768548	1.00[AMR][1000 genomes]
rs73768655	1.00[AMR][1000 genomes]
rs73768656	1.00[AMR][1000 genomes]
rs73768663	1.00[AMR][1000 genomes]
rs73768664	1.00[AMR][1000 genomes]
rs73768668	1.00[AMR][1000 genomes]
rs73768669	1.00[AMR][1000 genomes]
rs73768672	1.00[AMR][1000 genomes]
rs73768674	1.00[AMR][1000 genomes]
rs73768687	1.00[AMR][1000 genomes]
rs73768688	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
17	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
18	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
19	nsv1030331	chr6:118874345-118975680	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
20	nsv969439	chr6:118900716-118913670	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118895800-118911400	Weak transcription	Right Ventricle	heart
2	chr6:118901000-118926200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:118901400-118913000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:118901600-118912000	Strong transcription	Primary T cells from cord blood	blood
5	chr6:118902000-118927400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:118902200-118911400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:118902200-118911600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:118902200-118939800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:118902400-118917400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:118902400-118918000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:118902400-118924800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:118902400-118927400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:118903600-118924200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:118903800-118911400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:118904000-118924200	Weak transcription	Primary B cells from cord blood	blood
16	chr6:118904400-118916200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:118904400-118926200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:118904400-118930000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:118906400-118919600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:118906600-118911600	Weak transcription	Fetal Thymus	thymus
21	chr6:118907000-118911400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr6:118907200-118924200	Weak transcription	Dnd41	blood
23	chr6:118908400-118926200	Weak transcription	Pancreas	Pancrea
24	chr6:118908600-118916200	Weak transcription	Small Intestine	intestine
25	chr6:118909000-118926200	Weak transcription	Gastric	stomach
26	chr6:118909400-118912000	Enhancers	Brain Substantia Nigra	brain
27	chr6:118909400-118912000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:118909400-118912400	Weak transcription	GM12878-XiMat	blood
29	chr6:118909400-118918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:118909800-118912000	Enhancers	Brain Hippocampus Middle	brain
31	chr6:118909800-118913400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:118910000-118911400	Enhancers	Adipose Nuclei	Adipose
33	chr6:118910000-118911800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr6:118910000-118912000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:118910000-118912000	Enhancers	Right Atrium	heart
36	chr6:118910000-118912200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:118910000-118912200	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr6:118910000-118912600	Enhancers	Left Ventricle	heart
39	chr6:118910200-118912000	Enhancers	Fetal Lung	lung
40	chr6:118910400-118911400	Weak transcription	Lung	lung
41	chr6:118910400-118911800	Enhancers	Brain Cingulate Gyrus	brain
42	chr6:118910400-118912000	Enhancers	Brain Anterior Caudate	brain
43	chr6:118910400-118912400	Enhancers	Ovary	ovary
44	chr6:118910600-118911800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:118910600-118911800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:118910600-118912000	Enhancers	Fetal Kidney	kidney
47	chr6:118910600-118912000	Enhancers	Fetal Muscle Leg	muscle
48	chr6:118910800-118911400	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr6:118910800-118912000	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr6:118910800-118912000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links