Variant report

Variant	rs73766582
Chromosome Location	chr6:118927760-118927761
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs17080186	1.00[AMR][1000 genomes]
rs17080221	1.00[AMR][1000 genomes]
rs2883871	1.00[AMR][1000 genomes]
rs55761377	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55968023	1.00[AMR][1000 genomes]
rs56007878	1.00[AMR][1000 genomes]
rs56057396	1.00[AMR][1000 genomes]
rs56242764	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56259947	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56348705	1.00[AMR][1000 genomes]
rs57161631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57622287	1.00[AMR][1000 genomes]
rs58070035	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58157400	1.00[AMR][1000 genomes]
rs58510356	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59685154	1.00[AMR][1000 genomes]
rs59715007	1.00[AMR][1000 genomes]
rs60606021	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60630459	1.00[AMR][1000 genomes]
rs73766505	1.00[AMR][1000 genomes]
rs73766506	1.00[AMR][1000 genomes]
rs73766507	1.00[AMR][1000 genomes]
rs73766508	1.00[AMR][1000 genomes]
rs73766509	1.00[AMR][1000 genomes]
rs73766511	1.00[AMR][1000 genomes]
rs73766513	1.00[AMR][1000 genomes]
rs73766536	1.00[AMR][1000 genomes]
rs73766541	1.00[AMR][1000 genomes]
rs73766547	1.00[AMR][1000 genomes]
rs73766558	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766561	1.00[AMR][1000 genomes]
rs73766562	1.00[AMR][1000 genomes]
rs73766563	1.00[AMR][1000 genomes]
rs73766564	1.00[AMR][1000 genomes]
rs73766571	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766572	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766575	1.00[AMR][1000 genomes]
rs73766576	1.00[AMR][1000 genomes]
rs73766579	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766587	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766588	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766589	1.00[AMR][1000 genomes]
rs73766591	1.00[AMR][1000 genomes]
rs73766593	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766602	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768507	0.92[AFR][1000 genomes]
rs73768508	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768523	1.00[AMR][1000 genomes]
rs73768526	1.00[AMR][1000 genomes]
rs73768532	1.00[AMR][1000 genomes]
rs73768534	1.00[AMR][1000 genomes]
rs73768543	1.00[AMR][1000 genomes]
rs73768544	1.00[AMR][1000 genomes]
rs73768545	1.00[AMR][1000 genomes]
rs73768546	1.00[AMR][1000 genomes]
rs73768547	1.00[AMR][1000 genomes]
rs73768548	1.00[AMR][1000 genomes]
rs73768668	1.00[AMR][1000 genomes]
rs73768669	1.00[AMR][1000 genomes]
rs73768672	1.00[AMR][1000 genomes]
rs73768674	1.00[AMR][1000 genomes]
rs73768687	1.00[AMR][1000 genomes]
rs73768688	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532051	chr6:118551027-119044197	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1025456	chr6:118669672-119058789	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv432958	chr6:118692307-119010307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1034448	chr6:118698169-119016383	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv1025097	chr6:118699752-119058789	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
11	nsv532052	chr6:118711850-119057295	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
12	nsv432959	chr6:118716318-119010307	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
13	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
14	nsv949416	chr6:118772508-119033063	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
15	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
16	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
17	nsv1022865	chr6:118786586-119058789	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
18	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
19	nsv1030331	chr6:118874345-118975680	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118902200-118939800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr6:118904400-118930000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:118912200-118936600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:118912200-118939000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:118912200-118966200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:118913000-118940200	Weak transcription	Ovary	ovary
7	chr6:118919800-118928000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:118920800-118951200	Weak transcription	HSMM	muscle
9	chr6:118921200-118932200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:118923000-118939000	Weak transcription	Right Ventricle	heart
11	chr6:118924400-118928600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr6:118924800-118928000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr6:118924800-118932600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:118924800-118933400	Weak transcription	Fetal Thymus	thymus
15	chr6:118925000-118938800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:118925000-118945000	Weak transcription	Primary B cells from cord blood	blood
17	chr6:118925200-118932800	Weak transcription	Primary B cells from peripheral blood	blood
18	chr6:118925400-118938400	Weak transcription	K562	blood
19	chr6:118926400-118940000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr6:118926600-118928200	Weak transcription	Right Atrium	heart
21	chr6:118926600-118928400	Weak transcription	Pancreas	Pancrea
22	chr6:118926600-118928400	Weak transcription	Thymus	Thymus
23	chr6:118926600-118931600	Weak transcription	Gastric	stomach
24	chr6:118926600-118933400	Weak transcription	Fetal Stomach	stomach
25	chr6:118926600-118939800	Weak transcription	Left Ventricle	heart
26	chr6:118926600-118947000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:118927000-118965000	Weak transcription	NHLF	lung
28	chr6:118927200-118928200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:118927200-118928600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:118927200-118928600	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:118927200-118929200	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:118927200-118929200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr6:118927400-118927800	Enhancers	Primary T cells from cord blood	blood
34	chr6:118927400-118927800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr6:118927400-118927800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:118927400-118927800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr6:118927400-118927800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:118927400-118927800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:118927400-118927800	Enhancers	GM12878-XiMat	blood
40	chr6:118927400-118928000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr6:118927400-118928400	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr6:118927400-118928600	Enhancers	Dnd41	blood
43	chr6:118927400-118928800	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr6:118927400-118929000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr6:118927400-118929200	Enhancers	Stomach Mucosa	stomach
46	chr6:118927400-118930000	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr6:118927400-118932000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr6:118927600-118927800	Enhancers	Psoas Muscle	Psoas
49	chr6:118927600-118928800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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