Variant report

Variant	rs73768548
Chromosome Location	chr6:119070433-119070434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119057902..119060681-chr6:119068005..119070664,2	K562	blood:
2	chr6:118977602..118979632-chr6:119069204..119070765,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55761377	1.00[AMR][1000 genomes]
rs55968023	1.00[AMR][1000 genomes]
rs56007878	1.00[AMR][1000 genomes]
rs56057396	1.00[AMR][1000 genomes]
rs56242764	1.00[AMR][1000 genomes]
rs56259947	1.00[AMR][1000 genomes]
rs57161631	1.00[AMR][1000 genomes]
rs57622287	1.00[AMR][1000 genomes]
rs58070035	1.00[AMR][1000 genomes]
rs58510356	1.00[AMR][1000 genomes]
rs59685154	1.00[AMR][1000 genomes]
rs60606021	1.00[AMR][1000 genomes]
rs60630459	1.00[AMR][1000 genomes]
rs73766547	1.00[AMR][1000 genomes]
rs73766558	1.00[AMR][1000 genomes]
rs73766561	1.00[AMR][1000 genomes]
rs73766562	1.00[AMR][1000 genomes]
rs73766563	1.00[AMR][1000 genomes]
rs73766564	1.00[AMR][1000 genomes]
rs73766571	1.00[AMR][1000 genomes]
rs73766572	1.00[AMR][1000 genomes]
rs73766575	1.00[AMR][1000 genomes]
rs73766576	1.00[AMR][1000 genomes]
rs73766579	1.00[AMR][1000 genomes]
rs73766582	1.00[AMR][1000 genomes]
rs73766587	1.00[AMR][1000 genomes]
rs73766588	1.00[AMR][1000 genomes]
rs73766589	1.00[AMR][1000 genomes]
rs73766591	1.00[AMR][1000 genomes]
rs73766593	1.00[AMR][1000 genomes]
rs73766602	1.00[AMR][1000 genomes]
rs73768508	1.00[AMR][1000 genomes]
rs73768523	1.00[AMR][1000 genomes]
rs73768526	1.00[AMR][1000 genomes]
rs73768532	1.00[AMR][1000 genomes]
rs73768534	1.00[AMR][1000 genomes]
rs73768543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768544	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768545	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73768547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
8	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv464030	chr6:119043898-119080379	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv470855	chr6:119043898-119080379	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv604560	chr6:119043898-119080379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv886568	chr6:119044453-119132164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv886569	chr6:119055873-119132164	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119066000-119071000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:119066200-119070800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:119067000-119070600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:119068800-119070600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:119069000-119070800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:119069200-119071000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:119069200-119072000	Enhancers	NH-A	brain
8	chr6:119069400-119070600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:119069400-119070600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:119069400-119070600	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr6:119069400-119070600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr6:119069600-119070600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:119069600-119070600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:119069600-119070800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
15	chr6:119069600-119070800	Enhancers	Dnd41	blood
16	chr6:119069600-119077600	Weak transcription	Thymus	Thymus
17	chr6:119069800-119070600	Flanking Active TSS	NHLF	lung
18	chr6:119070000-119070800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr6:119070000-119071000	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:119070000-119071200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr6:119070000-119071800	Weak transcription	Liver	Liver
22	chr6:119070200-119070600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:119070200-119070600	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr6:119070200-119070600	Enhancers	Fetal Brain Female	brain
25	chr6:119070200-119070600	Flanking Active TSS	HSMMtube	muscle
26	chr6:119070200-119070800	Enhancers	Adipose Nuclei	Adipose
27	chr6:119070200-119070800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr6:119070200-119070800	Enhancers	Fetal Lung	lung
29	chr6:119070200-119071400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:119070400-119070600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:119070400-119070600	Flanking Active TSS	Brain Angular Gyrus	brain
32	chr6:119070400-119070600	Flanking Active TSS	Brain Anterior Caudate	brain
33	chr6:119070400-119070600	Active TSS	Fetal Brain Male	brain
34	chr6:119070400-119070600	Flanking Active TSS	HSMM	muscle
35	chr6:119070400-119070600	Flanking Active TSS	NHDF-Ad	bronchial
36	chr6:119070400-119070800	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr6:119070400-119070800	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr6:119070400-119070800	Enhancers	Brain Cingulate Gyrus	brain
39	chr6:119070400-119070800	Enhancers	Brain Substantia Nigra	brain
40	chr6:119070400-119070800	Enhancers	Ovary	ovary
41	chr6:119070400-119070800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr6:119070400-119071000	Enhancers	Osteobl	bone

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