Variant report

Variant	rs73767516
Chromosome Location	chr5:35117229-35117230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16871732	1.00[AMR][1000 genomes]
rs16871815	1.00[AMR][1000 genomes]
rs6868687	1.00[AMR][1000 genomes]
rs6875116	1.00[AMR][1000 genomes]
rs6884214	1.00[AMR][1000 genomes]
rs73767518	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767520	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4790	chr5:35090745-35123632	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35112800-35129800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:35113800-35118000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35113800-35118400	Strong transcription	Fetal Intestine Small	intestine
4	chr5:35113800-35124000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:35114000-35118200	Strong transcription	Fetal Intestine Large	intestine
6	chr5:35114000-35118200	Strong transcription	Placenta	Placenta
7	chr5:35114200-35120800	Weak transcription	Fetal Kidney	kidney
8	chr5:35115800-35119800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:35115800-35129800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:35116000-35118000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:35116200-35117400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:35116200-35121000	Weak transcription	Stomach Mucosa	stomach
13	chr5:35116400-35117400	Weak transcription	Osteobl	bone
14	chr5:35116600-35117800	Weak transcription	NH-A	brain
15	chr5:35116800-35118000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:35116800-35118200	Strong transcription	Liver	Liver
17	chr5:35116800-35123000	Weak transcription	Gastric	stomach
18	chr5:35116800-35127800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr5:35117000-35122400	Weak transcription	HepG2	liver
20	chr5:35117200-35120400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:35117200-35121400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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