Variant report

Variant	rs73767518
Chromosome Location	chr5:35120407-35120408
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:35118263..35120993-chr5:35135116..35136770,2	MCF-7	breast:
2	chr5:35119161..35121862-chr5:35122776..35125240,2	MCF-7	breast:
3	chr5:35113747..35115676-chr5:35118323..35120483,2	K562	blood:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16871732	1.00[AMR][1000 genomes]
rs16871815	1.00[AMR][1000 genomes]
rs6868687	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6875116	1.00[AMR][1000 genomes]
rs6884214	1.00[AMR][1000 genomes]
rs73767516	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767520	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4790	chr5:35090745-35123632	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35112800-35129800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:35113800-35124000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr5:35114200-35120800	Weak transcription	Fetal Kidney	kidney
4	chr5:35115800-35129800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr5:35116200-35121000	Weak transcription	Stomach Mucosa	stomach
6	chr5:35116800-35123000	Weak transcription	Gastric	stomach
7	chr5:35116800-35127800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr5:35117000-35122400	Weak transcription	HepG2	liver
9	chr5:35117200-35121400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:35118000-35127600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr5:35118200-35120800	Weak transcription	Liver	Liver
12	chr5:35118200-35122800	Weak transcription	Fetal Intestine Large	intestine
13	chr5:35118200-35129800	Weak transcription	Placenta	Placenta
14	chr5:35118400-35124000	Weak transcription	Fetal Intestine Small	intestine
15	chr5:35119400-35120600	Enhancers	Fetal Stomach	stomach
16	chr5:35119400-35120600	Enhancers	Ovary	ovary
17	chr5:35119600-35120600	Weak transcription	Fetal Lung	lung
18	chr5:35119800-35121200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr5:35120200-35121200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr5:35120200-35127800	Weak transcription	NHDF-Ad	bronchial
21	chr5:35120200-35127800	Weak transcription	NHLF	lung
22	chr5:35120400-35120600	Enhancers	Fetal Heart	heart
23	chr5:35120400-35129000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links